EBImage 2.3.11
Oleg Sklyar
| Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/EBImage | | Last Changed Rev: 28470 / Revision: 29143 | | Last Changed Date: 2007-11-05 09:40:50 -0800 (Mon, 05 Nov 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | [ OK ] | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | WARNINGS | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | N O T S U P P O R T E D |
* checking for file 'EBImage/DESCRIPTION' ... OK
* preparing 'EBImage':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
/tmp/Rinst856198457
* Installing *source* package 'EBImage' ...
checking for Magick-config... yes
* found ImageMagick version 6.3.5 Q16
* found ImageMagick includes in -I/usr/include
checking for pkg-config... yes
* compiling with GTK+ support
-----------------------------------------------------
configure: creating ./config.status
config.status: creating src/Makevars
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -DPNG_NO_MMX_CODE -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -g -fstack-protector-all -Wall -W -pthread -I/usr/include -fpic -g -O2 -Wall -c colors.c -o colors.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -DPNG_NO_MMX_CODE -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -g -fstack-protector-all -Wall -W -pthread -I/usr/include -fpic -g -O2 -Wall -c conversions.c -o conversions.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -DPNG_NO_MMX_CODE -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -g -fstack-protector-all -Wall -W -pthread -I/usr/include -fpic -g -O2 -Wall -c display.c -o display.o
In file included from /usr/include/glib-2.0/glib/gthread.h:32,
from /usr/include/glib-2.0/glib/gasyncqueue.h:30,
from /usr/include/glib-2.0/glib.h:32,
from /usr/include/gtk-2.0/gdk/gdktypes.h:32,
from /usr/include/gtk-2.0/gdk/gdkcolor.h:31,
from /usr/include/gtk-2.0/gdk/gdkcairo.h:23,
from /usr/include/gtk-2.0/gdk/gdk.h:30,
from /usr/include/gtk-2.0/gtk/gtk.h:31,
from display.c:24:
/usr/include/glib-2.0/glib/gutils.h:316: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:316: warning: to disable this warning use -fgnu89-inline or the gnu_inline function attribute
/usr/include/glib-2.0/glib/gutils.h:330: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:343: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:362: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:370: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:387: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:396: warning: C99 inline functions are not supported; using GNU89
In file included from /usr/include/glib-2.0/glib/gasyncqueue.h:30,
from /usr/include/glib-2.0/glib.h:32,
from /usr/include/gtk-2.0/gdk/gdktypes.h:32,
from /usr/include/gtk-2.0/gdk/gdkcolor.h:31,
from /usr/include/gtk-2.0/gdk/gdkcairo.h:23,
from /usr/include/gtk-2.0/gdk/gdk.h:30,
from /usr/include/gtk-2.0/gtk/gtk.h:31,
from display.c:24:
/usr/include/glib-2.0/glib/gthread.h:334: warning: C99 inline functions are not supported; using GNU89
display.c: In function ‘onWinDestroy’:
display.c:259: warning: unused parameter ‘wnd’
display.c:259: warning: unused parameter ‘event’
display.c: In function ‘onZoomInPress’:
display.c:274: warning: unused parameter ‘btn’
display.c: In function ‘onZoomOutPress’:
display.c:304: warning: unused parameter ‘btn’
display.c: In function ‘onZoomOnePress’:
display.c:334: warning: unused parameter ‘btn’
display.c: In function ‘onNextImPress’:
display.c:359: warning: unused parameter ‘btn’
display.c: In function ‘onPrevImPress’:
display.c:393: warning: unused parameter ‘btn’
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -DPNG_NO_MMX_CODE -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -g -fstack-protector-all -Wall -W -pthread -I/usr/include -fpic -g -O2 -Wall -c drawable.c -o drawable.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -DPNG_NO_MMX_CODE -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -g -fstack-protector-all -Wall -W -pthread -I/usr/include -fpic -g -O2 -Wall -c EBImage.c -o EBImage.o
In file included from /usr/include/glib-2.0/glib/gthread.h:32,
from /usr/include/glib-2.0/glib/gasyncqueue.h:30,
from /usr/include/glib-2.0/glib.h:32,
from /usr/include/gtk-2.0/gdk/gdktypes.h:32,
from /usr/include/gtk-2.0/gdk/gdkcolor.h:31,
from /usr/include/gtk-2.0/gdk/gdkcairo.h:23,
from /usr/include/gtk-2.0/gdk/gdk.h:30,
from /usr/include/gtk-2.0/gtk/gtk.h:31,
from EBImage.c:41:
/usr/include/glib-2.0/glib/gutils.h:316: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:316: warning: to disable this warning use -fgnu89-inline or the gnu_inline function attribute
/usr/include/glib-2.0/glib/gutils.h:330: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:343: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:362: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:370: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:387: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:396: warning: C99 inline functions are not supported; using GNU89
In file included from /usr/include/glib-2.0/glib/gasyncqueue.h:30,
from /usr/include/glib-2.0/glib.h:32,
from /usr/include/gtk-2.0/gdk/gdktypes.h:32,
from /usr/include/gtk-2.0/gdk/gdkcolor.h:31,
from /usr/include/gtk-2.0/gdk/gdkcairo.h:23,
from /usr/include/gtk-2.0/gdk/gdk.h:30,
from /usr/include/gtk-2.0/gtk/gtk.h:31,
from EBImage.c:41:
/usr/include/glib-2.0/glib/gthread.h:334: warning: C99 inline functions are not supported; using GNU89
EBImage.c: In function ‘_doIter’:
EBImage.c:94: warning: unused parameter ‘userData’
EBImage.c: In function ‘R_unload_EBImage’:
EBImage.c:141: warning: unused parameter ‘winDll’
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -DPNG_NO_MMX_CODE -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -g -fstack-protector-all -Wall -W -pthread -I/usr/include -fpic -g -O2 -Wall -c features_haralick.c -o features_haralick.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -DPNG_NO_MMX_CODE -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -g -fstack-protector-all -Wall -W -pthread -I/usr/include -fpic -g -O2 -Wall -c features_hull.c -o features_hull.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -DPNG_NO_MMX_CODE -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -g -fstack-protector-all -Wall -W -pthread -I/usr/include -fpic -g -O2 -Wall -c features_moments.c -o features_moments.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -DPNG_NO_MMX_CODE -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -g -fstack-protector-all -Wall -W -pthread -I/usr/include -fpic -g -O2 -Wall -c features_zernike.c -o features_zernike.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -DPNG_NO_MMX_CODE -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -g -fstack-protector-all -Wall -W -pthread -I/usr/include -fpic -g -O2 -Wall -c filters_distmap.c -o filters_distmap.o
g++ -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -g -fstack-protector-all -Wall -W -pthread -I/usr/include -fpic -g -O2 -Wall -c filters_floodfill.cpp -o filters_floodfill.o
filters_floodfill.cpp: In instantiation of ‘void fillAroundObjectHullT(T**, T**, const XYPoint&, const Box&, int&) [with T = int]’:
filters_floodfill.cpp:406: instantiated from ‘void fillHullT(T*, const XYPoint&) [with T = int]’
filters_floodfill.cpp:74: instantiated from here
filters_floodfill.cpp:237: warning: unused parameter ‘size’
filters_floodfill.cpp: In instantiation of ‘void fillAroundObjectHullT(T**, T**, const XYPoint&, const Box&, int&) [with T = double]’:
filters_floodfill.cpp:406: instantiated from ‘void fillHullT(T*, const XYPoint&) [with T = double]’
filters_floodfill.cpp:78: instantiated from here
filters_floodfill.cpp:237: warning: unused parameter ‘size’
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -DPNG_NO_MMX_CODE -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -g -fstack-protector-all -Wall -W -pthread -I/usr/include -fpic -g -O2 -Wall -c filters_magick.c -o filters_magick.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -DPNG_NO_MMX_CODE -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -g -fstack-protector-all -Wall -W -pthread -I/usr/include -fpic -g -O2 -Wall -c filters_morph.c -o filters_morph.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -DPNG_NO_MMX_CODE -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -g -fstack-protector-all -Wall -W -pthread -I/usr/include -fpic -g -O2 -Wall -c filters_normalize.c -o filters_normalize.o
g++ -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -g -fstack-protector-all -Wall -W -pthread -I/usr/include -fpic -g -O2 -Wall -c filters_propagate.cpp -o filters_propagate.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -DPNG_NO_MMX_CODE -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -g -fstack-protector-all -Wall -W -pthread -I/usr/include -fpic -g -O2 -Wall -c filters_thresh.c -o filters_thresh.o
g++ -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -g -fstack-protector-all -Wall -W -pthread -I/usr/include -fpic -g -O2 -Wall -c filters_watershed.cpp -o filters_watershed.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -DPNG_NO_MMX_CODE -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -g -fstack-protector-all -Wall -W -pthread -I/usr/include -fpic -g -O2 -Wall -c frameDist.c -o frameDist.o
frameDist.c:27: warning: C99 inline functions are not supported; using GNU89
frameDist.c:27: warning: to disable this warning use -fgnu89-inline or the gnu_inline function attribute
frameDist.c:119: warning: C99 inline functions are not supported; using GNU89
frameDist.c:130: warning: C99 inline functions are not supported; using GNU89
frameDist.c:169: warning: C99 inline functions are not supported; using GNU89
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -DPNG_NO_MMX_CODE -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -g -fstack-protector-all -Wall -W -pthread -I/usr/include -fpic -g -O2 -Wall -c io.c -o io.o
In file included from /usr/include/glib-2.0/glib/gthread.h:32,
from /usr/include/glib-2.0/glib/gasyncqueue.h:30,
from /usr/include/glib-2.0/glib.h:32,
from /usr/include/gtk-2.0/gdk/gdktypes.h:32,
from /usr/include/gtk-2.0/gdk/gdkcolor.h:31,
from /usr/include/gtk-2.0/gdk/gdkcairo.h:23,
from /usr/include/gtk-2.0/gdk/gdk.h:30,
from /usr/include/gtk-2.0/gtk/gtk.h:31,
from io.c:17:
/usr/include/glib-2.0/glib/gutils.h:316: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:316: warning: to disable this warning use -fgnu89-inline or the gnu_inline function attribute
/usr/include/glib-2.0/glib/gutils.h:330: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:343: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:362: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:370: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:387: warning: C99 inline functions are not supported; using GNU89
/usr/include/glib-2.0/glib/gutils.h:396: warning: C99 inline functions are not supported; using GNU89
In file included from /usr/include/glib-2.0/glib/gasyncqueue.h:30,
from /usr/include/glib-2.0/glib.h:32,
from /usr/include/gtk-2.0/gdk/gdktypes.h:32,
from /usr/include/gtk-2.0/gdk/gdkcolor.h:31,
from /usr/include/gtk-2.0/gdk/gdkcairo.h:23,
from /usr/include/gtk-2.0/gdk/gdk.h:30,
from /usr/include/gtk-2.0/gtk/gtk.h:31,
from io.c:17:
/usr/include/glib-2.0/glib/gthread.h:334: warning: C99 inline functions are not supported; using GNU89
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -DPNG_NO_MMX_CODE -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -g -fstack-protector-all -Wall -W -pthread -I/usr/include -fpic -g -O2 -Wall -c objects.c -o objects.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -DPNG_NO_MMX_CODE -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -Wall -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -g -fstack-protector-all -Wall -W -pthread -I/usr/include -fpic -g -O2 -Wall -c tools.c -o tools.o
g++ -shared -L/usr/local/lib64 -o EBImage.so colors.o conversions.o display.o drawable.o EBImage.o features_haralick.o features_hull.o features_moments.o features_zernike.o filters_distmap.o filters_floodfill.o filters_magick.o filters_morph.o filters_normalize.o filters_propagate.o filters_thresh.o filters_watershed.o frameDist.o io.o objects.o tools.o -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgdk_pixbuf-2.0 -lpangocairo-1.0 -lpango-1.0 -lcairo -lgobject-2.0 -lgmodule-2.0 -ldl -lglib-2.0 -L/usr/lib64 -L/usr/lib64 -L/usr/lib64 -lfreetype -lz -lMagick -llcms -ltiff -lfreetype -ljpeg -lfontconfig -lXext -lSM -lICE -lX11 -lXt -lbz2 -lz -lm -lpthread -lWand -lMagick -lWand -L/home/biocbuild/bbs-2.2-bioc/R/lib -lR
** R
** data
** inst
** preparing package for lazy loading
** help
>>> Building/Updating help pages for package 'EBImage'
Formats: text html latex example
EBImage-deprecated text html latex
EBImage-package text html latex
Image.generic.methods text html latex
channel text html latex example
class.Image text html latex example
class.IndexedImage text html latex example
constructors text html latex example
denoising text html latex example
display text html latex example
distmap text html latex example
drawable text html latex example
enhancing text html latex
features-edge text html latex example
features-haralick text html latex example
features-hull text html latex example
features-moments text html latex example
features-zernike text html latex example
filter2 text html latex
floodfill text html latex example
frameDist text html latex
getFeatures text html latex example
input-output text html latex example
internals text html latex
matchObjects text html latex
morphology text html latex example
normalize text html latex example
paintObjects text html latex example
propagate text html latex example
rmObjects text html latex example
segmenting text html latex
stackObjects text html latex example
thresholding text html latex example
tile text html latex example
transformations text html latex
watershed text html latex example
** building package indices ...
* DONE (EBImage)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'EBImage_2.3.11.tar.gz'