DEDS 1.13.0
Yuanyuan Xiao
| Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/DEDS | | Last Changed Rev: 28017 / Revision: 29143 | | Last Changed Date: 2007-10-16 10:37:13 -0700 (Tue, 16 Oct 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | [ OK ] | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | OK | OK |
* checking for working latex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.2-bioc/meat/DEDS.Rcheck'
* using R version 2.7.0 Under development (unstable) (2007-12-09 r43632)
* checking for file 'DEDS/DESCRIPTION' ... OK
* this is package 'DEDS' version '1.13.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'DEDS' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating DEDS-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... NOTE
--- running texi2dvi on vignettes
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './DEDS.tex' ...
Package natbib Warning: Citation `Tusheretal' on page 1 undefined on input line
Package natbib Warning: Citation `DEDS' on page 1 undefined on input line 70.
Package natbib Warning: Citation `Ingrid' on page 1 undefined on input line 74.
Package natbib Warning: Citation `limma' on page 1 undefined on input line 75.
Package natbib Warning: Citation `Irizarryetal03' on page 1 undefined on input
Package natbib Warning: Citation `Dudoitetal02' on page 1 undefined on input li
Package natbib Warning: Citation `Benjamini&Hochberg95' on page 3 undefined on
Package natbib Warning: Citation `Dudoit&Shaffer02' on page 3 undefined on inpu
Package natbib Warning: Citation `Dudoitetal02' on page 4 undefined on input li
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './DEDS.tex' ...
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './DEDS.tex' ...
* creating DEDS-manual.tex ... OK
* checking DEDS-manual.tex ... OK
/loc/home/biocbuild/bbs-2.2-bioc/meat/DEDS.Rcheck
* Installing *source* package 'DEDS' ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c deds.c -o deds.o
deds.c: In function ‘type2stat’:
deds.c:451: warning: ‘test’ may be used uninitialized in this function
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c distance.c -o distance.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c input.c -o input.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c manip.c -o manip.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c random.c -o random.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c sampling.c -o sampling.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c stat_fun.c -o stat_fun.o
gcc -std=gnu99 -shared -L/usr/local/lib -o DEDS.so deds.o distance.o input.o manip.o random.o sampling.o stat_fun.o -L/home/biocbuild/bbs-2.2-bioc/R/lib -lR
** R
** data
** inst
** preparing package for lazy loading
** help
Note: unmatched right brace in 'comp.ebayes' on or after line 38
Note: removing empty section \details
Note: removing empty section \examples
Note: removing empty section \examples
>>> Building/Updating help pages for package 'DEDS'
Formats: text html latex example
ApoA1 text html latex
DEDS-internal text html latex
affySpikeIn text html latex
aggregateFun text html latex example
comp.B text html latex example
comp.F text html latex example
comp.FC text html latex example
comp.SAM text html latex example
comp.adjp text html latex example
comp.ebayes text html latex example
comp.fdr text html latex example
comp.modF text html latex example
comp.modt text html latex example
comp.stat text html latex example
comp.t text html latex example
comp.unadjp text html latex example
deds.chooseTest text html latex example
deds.class text html latex
deds.genExtra text html latex example
deds.pval text html latex
deds.stat text html latex example
deds.stat.linkC text html latex example
hist.DEDS text html latex
pairs.DEDS text html latex example
qqnorm.DEDS text html latex example
topgenes text html latex example
** building package indices ...
* DONE (DEDS)