CGHcall 1.1.9
Sjoerd Vosse
| Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/CGHcall | | Last Changed Rev: 29011 / Revision: 29143 | | Last Changed Date: 2007-12-04 03:09:56 -0800 (Tue, 04 Dec 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | [ OK ] | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | OK | OK |
* checking for working latex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.2-bioc/meat/CGHcall.Rcheck'
* using R version 2.7.0 Under development (unstable) (2007-12-09 r43632)
* checking for file 'CGHcall/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'CGHcall' version '1.1.9'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'CGHcall' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating CGHcall-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... NOTE
--- running texi2dvi on vignettes
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './CGHcall.tex' ...
Package natbib Warning: Citation `CGHcall' on page 1 undefined on input line 40
Package natbib Warning: Citation `Wilting' on page 1 undefined on input line 40
Package natbib Warning: Citation `Impute' on page 2 undefined on input line 60.
Package natbib Warning: Citation `DNAcopy' on page 2 undefined on input line 81
Package natbib Warning: Citation `CGHcall' on page 2 undefined on input line 81
Package natbib Warning: Citation `DNAcopy' on page 2 undefined on input line 10
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './CGHcall.tex' ...
Package natbib Warning: Citation `CGHcall' on page 1 undefined on input line 40
Package natbib Warning: Citation `Wilting' on page 1 undefined on input line 40
Package natbib Warning: Citation `Impute' on page 2 undefined on input line 60.
Package natbib Warning: Citation `DNAcopy' on page 2 undefined on input line 81
Package natbib Warning: Citation `CGHcall' on page 2 undefined on input line 81
Package natbib Warning: Citation `DNAcopy' on page 3 undefined on input line 10
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './CGHcall.tex' ...
* creating CGHcall-manual.tex ... OK
* checking CGHcall-manual.tex ... OK
/loc/home/biocbuild/bbs-2.2-bioc/meat/CGHcall.Rcheck
* Installing *source* package 'CGHcall' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: impute
Loading required package: DNAcopy
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
** help
>>> Building/Updating help pages for package 'CGHcall'
Formats: text html latex example
CGHcall-package text html latex
CGHcall text html latex example
Wilting text html latex
chromosomes text html latex
class.cghCall text html latex example
class.cghRaw text html latex example
class.cghSeg text html latex example
copynumber text html latex
make_cghRaw text html latex example
normalize text html latex example
plot.summary text html latex example
preprocess text html latex example
probloss text html latex
segmentData text html latex example
** building package indices ...
* DONE (CGHcall)