AffyExpress 1.4.0
Xuejun Arthur Li
| Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/AffyExpress | | Last Changed Rev: 28359 / Revision: 29143 | | Last Changed Date: 2007-10-31 14:40:04 -0700 (Wed, 31 Oct 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | ERROR | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | [ ERROR ] | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | ERROR | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | OK | OK |
* checking for working latex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.2-bioc/meat/AffyExpress.Rcheck'
* using R version 2.7.0 Under development (unstable) (2007-12-06 r43609)
* checking for file 'AffyExpress/DESCRIPTION' ... OK
* this is package 'AffyExpress' version '1.4.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'AffyExpress' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating AffyExpress-Ex.R ... OK
* checking examples ... ERROR
Running examples in 'AffyExpress-Ex.R' failed.
The error most likely occurred in:
> ### * import.data
>
> flush(stderr()); flush(stdout())
>
> ### Name: import.data
> ### Title: Importing Affy Cel File
> ### Aliases: import.data
> ### Keywords: methods
>
> ### ** Examples
>
> datadir <- system.file("extdata", package = "estrogen")
> raw <- import.data("phenodata.txt", path=datadir, header=TRUE, sep="",
+ row.names="filename")
Warning in file(file, "r") :
cannot open file '/home/biocbuild/bbs-2.2-bioc/R/library/estrogen/extdata/phenodata.txt', reason 'No such file or directory'
Error in file(file, "r") : unable to open connection
Calls: import.data -> read.AnnotatedDataFrame -> read.table -> file
Execution halted
/loc/home/biocbuild/bbs-2.2-bioc/meat/AffyExpress.Rcheck
* Installing *source* package 'AffyExpress' ...
** R
** data
** inst
** help
>>> Building/Updating help pages for package 'AffyExpress'
Formats: text html latex example
AffyInteraction text html latex example
AffyQA text html latex example
AffyRegress text html latex example
Filter text html latex example
import.data text html latex example
interaction.result2html text html latex example
make.contrast text html latex example
make.design text html latex example
post.interaction text html latex example
pre.process text html latex example
regress text html latex example
result2html text html latex example
select.sig.gene text html latex example
testData text html latex
** building package indices ...
* DONE (AffyExpress)