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BioC experimental data: CHECK report for Affymoe430Expr on zin2

This page was generated on 2014-03-03 17:24:44 -0800 (Mon, 03 Mar 2014).

Package 5/189HostnameOS / ArchBUILDCHECKBUILD BIN
Affymoe430Expr 0.99.0
Zhicheng Ji
Snapshot Date: 2014-03-03 07:15:34 -0800 (Mon, 03 Mar 2014)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/Affymoe430Expr
Last Changed Rev: 2701 / Revision: 2705
Last Changed Date: 2014-02-24 16:14:41 -0800 (Mon, 24 Feb 2014)
zin2 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK [ WARNINGS ]
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS  TIMEOUT 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  WARNINGS  OK 

Summary

Package: Affymoe430Expr
Version: 0.99.0
Command: /home/biocbuild/bbs-2.14-bioc/R/bin/R CMD check --no-vignettes --timings Affymoe430Expr_0.99.0.tar.gz
StartedAt: 2014-03-03 10:09:42 -0800 (Mon, 03 Mar 2014)
EndedAt: 2014-03-03 10:11:30 -0800 (Mon, 03 Mar 2014)
EllapsedTime: 107.9 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: Affymoe430Expr.Rcheck
Warnings: 1

Command output

* using log directory ‘/home/biocbuild/bbs-2.14-data-experiment/meat/Affymoe430Expr.Rcheck’
* using R Under development (unstable) (2014-02-17 r65021)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘Affymoe430Expr/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘Affymoe430Expr’ version ‘0.99.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Affymoe430Expr’ can be installed ... [3s/12s] OK
* checking installed package size ... NOTE
  installed size is 406.1Mb
  sub-directories of 1Mb or more:
    extdata  406.0Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented data sets:
  ‘Affymoe430Exprtab.rda’
All user-level objects in a package should have documentation entries.
See the chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [1s/1s] OK
* checking PDF version of manual ... OK

WARNING: There was 1 warning.
NOTE: There was 1 note.
See
  ‘/home/biocbuild/bbs-2.14-data-experiment/meat/Affymoe430Expr.Rcheck/00check.log’
for details.

Affymoe430Expr.Rcheck/00install.out:

* installing *source* package ‘Affymoe430Expr’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (Affymoe430Expr)

Affymoe430Expr.Rcheck/Affymoe430Expr-Ex.timings:

nameusersystemelapsed
Affymoe430Expr0.2040.0560.261
Affymoe430Exprtab0.0680.0000.066