BioC experimental data: CHECK report for yri1kgv on moscato2

Package: yri1kgv

Version: 0.6.0

Command: rm -rf yri1kgv.buildbin-libdir && mkdir yri1kgv.buildbin-libdir && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=yri1kgv.buildbin-libdir yri1kgv_0.6.0.tar.gz >yri1kgv-install.out 2>&1 && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD check --library=yri1kgv.buildbin-libdir --install="check:yri1kgv-install.out" --force-multiarch --no-vignettes --timings yri1kgv_0.6.0.tar.gz

StartedAt: 2014-10-04 11:12:56 -0700 (Sat, 04 Oct 2014)

EndedAt: 2014-10-04 11:19:11 -0700 (Sat, 04 Oct 2014)

EllapsedTime: 375.1 seconds

RetCode: 0

Status:  OK

CheckDir: yri1kgv.Rcheck

Warnings: 0

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf yri1kgv.buildbin-libdir && mkdir yri1kgv.buildbin-libdir && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=yri1kgv.buildbin-libdir yri1kgv_0.6.0.tar.gz >yri1kgv-install.out 2>&1 && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD check --library=yri1kgv.buildbin-libdir --install="check:yri1kgv-install.out" --force-multiarch --no-vignettes --timings yri1kgv_0.6.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'E:/biocbld/bbs-2.14-data-experiment/meat/yri1kgv.Rcheck'
* using R version 3.1.1 (2014-07-10)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'yri1kgv/DESCRIPTION' ... OK
* this is package 'yri1kgv' version '0.6.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'yri1kgv' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 323.9Mb
  sub-directories of 1Mb or more:
    data    17.4Mb
    parts  305.9Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: 'GGBase'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File 'yri1kgv/R/zzz.R':
  .onLoad calls:
    packageStartupMessage(paste("To get a tailored smlSet, use getSS(\"",     pkgname, "\", [chrvec])", sep = ""), "\n")
    packageStartupMessage("available chromosomes are named ", paste(selectSome(cn),     collapse = ", "), "\n")

See section 'Good practice' in '?.onAttach'.
* checking Rd files ... NOTE
prepare_Rd: yri1kgv-package.Rd:41-44: Dropping empty section \seealso
prepare_Rd: yri1kgv-package.Rd:45-46: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... NONE
* checking PDF version of manual ... OK

NOTE: There were 4 notes.
See
  'E:/biocbld/bbs-2.14-data-experiment/meat/yri1kgv.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'yri1kgv' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

install for x64

* installing *source* package 'yri1kgv' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'yri1kgv' as yri1kgv_0.6.0.zip
* DONE (yri1kgv)