BioC experimental data: CHECK report for tweeDEseqCountData on moscato2

Package: tweeDEseqCountData

Version: 1.2.0

Command: rm -rf tweeDEseqCountData.buildbin-libdir && mkdir tweeDEseqCountData.buildbin-libdir && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=tweeDEseqCountData.buildbin-libdir tweeDEseqCountData_1.2.0.tar.gz >tweeDEseqCountData-install.out 2>&1 && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD check --library=tweeDEseqCountData.buildbin-libdir --install="check:tweeDEseqCountData-install.out" --force-multiarch --no-vignettes --timings tweeDEseqCountData_1.2.0.tar.gz

StartedAt: 2014-10-04 11:09:25 -0700 (Sat, 04 Oct 2014)

EndedAt: 2014-10-04 11:11:26 -0700 (Sat, 04 Oct 2014)

EllapsedTime: 120.3 seconds

RetCode: 0

Status:  OK

CheckDir: tweeDEseqCountData.Rcheck

Warnings: 0

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf tweeDEseqCountData.buildbin-libdir && mkdir tweeDEseqCountData.buildbin-libdir && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=tweeDEseqCountData.buildbin-libdir tweeDEseqCountData_1.2.0.tar.gz >tweeDEseqCountData-install.out 2>&1 && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD check --library=tweeDEseqCountData.buildbin-libdir --install="check:tweeDEseqCountData-install.out" --force-multiarch --no-vignettes --timings tweeDEseqCountData_1.2.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'E:/biocbld/bbs-2.14-data-experiment/meat/tweeDEseqCountData.Rcheck'
* using R version 3.1.1 (2014-07-10)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'tweeDEseqCountData/DESCRIPTION' ... OK
* this is package 'tweeDEseqCountData' version '1.2.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'tweeDEseqCountData' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 41.3Mb
  sub-directories of 1Mb or more:
    data  41.2Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: 'Biobase'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
NB: .First.lib is obsolete and will not be used in R >= 3.0.0
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... [5s] OK
** running examples for arch 'x64' ... [4s] OK
* checking PDF version of manual ... OK

NOTE: There were 3 notes.
See
  'E:/biocbld/bbs-2.14-data-experiment/meat/tweeDEseqCountData.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'tweeDEseqCountData' ...
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

install for x64

* installing *source* package 'tweeDEseqCountData' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'tweeDEseqCountData' as tweeDEseqCountData_1.2.0.zip
* DONE (tweeDEseqCountData)

name	user	system	elapsed
annotEnsembl63	0.40	0.00	0.41
cheung	0.36	0.00	0.36
commonPickrell1Huang	1.02	0.02	1.03
genderGenes	0	0	0
hkGenes	0	0	0
montgomery	0.31	0.01	0.32
pickrell	0.50	0.02	0.52

name	user	system	elapsed
annotEnsembl63	0.46	0.00	0.45
cheung	0.35	0.00	0.36
commonPickrell1Huang	1.13	0.03	1.16
genderGenes	0.01	0.00	0.01
hkGenes	0	0	0
montgomery	0.33	0.00	0.33
pickrell	0.44	0.03	0.47