BioC experimental data: CHECK report for miRNATarget on zin2

Package: miRNATarget

Version: 1.2.0

Command: /home/biocbuild/bbs-2.14-bioc/R/bin/R CMD check --no-vignettes --timings miRNATarget_1.2.0.tar.gz

StartedAt: 2014-10-04 09:31:23 -0700 (Sat, 04 Oct 2014)

EndedAt: 2014-10-04 09:32:11 -0700 (Sat, 04 Oct 2014)

EllapsedTime: 48.1 seconds

RetCode: 0

Status:  OK

CheckDir: miRNATarget.Rcheck

Warnings: 0

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-2.14-bioc/R/bin/R CMD check --no-vignettes --timings miRNATarget_1.2.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-2.14-data-experiment/meat/miRNATarget.Rcheck’
* using R version 3.1.1 (2014-07-10)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘miRNATarget/DESCRIPTION’ ... OK
* this is package ‘miRNATarget’ version ‘1.2.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  vignettes/.goutputstream-8N717W
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘miRNATarget’ can be installed ... [2s/3s] OK
* checking installed package size ... NOTE
  installed size is 59.6Mb
  sub-directories of 1Mb or more:
    data  59.3Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [14s/14s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There were 2 notes.
See
  ‘/home/biocbuild/bbs-2.14-data-experiment/meat/miRNATarget.Rcheck/00check.log’
for details.

* installing *source* package ‘miRNATarget’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (miRNATarget)

name	user	system	elapsed
HS_conv_id	0.016	0.000	0.018
HS_refseq_to_affy_hc_g110	0.004	0.000	0.006
HS_refseq_to_affy_hg_focus	0.024	0.000	0.022
HS_refseq_to_affy_hg_u133_plus_2	0.064	0.000	0.065
HS_refseq_to_affy_hg_u133a	0.04	0.00	0.04
HS_refseq_to_affy_hg_u133a_2	0.04	0.00	0.04
HS_refseq_to_affy_hg_u133b	0.032	0.000	0.030
HS_refseq_to_affy_hg_u95a	0.028	0.000	0.027
HS_refseq_to_affy_hg_u95av2	0.020	0.004	0.024
HS_refseq_to_affy_hg_u95b	0.016	0.000	0.016
HS_refseq_to_affy_hg_u95c	0.068	0.000	0.066
HS_refseq_to_affy_hg_u95d	0.008	0.000	0.006
HS_refseq_to_affy_hg_u95e	0.012	0.000	0.011
HS_refseq_to_affy_huex_1_0_st_v2	1.480	0.012	1.495
HS_refseq_to_affy_hugene_1_0_st_v1	0.048	0.004	0.054
HS_refseq_to_affy_hugenefl	0.016	0.000	0.016
HS_refseq_to_affy_u133_x3p	0.104	0.004	0.110
HS_refseq_to_agilent_cgh_44b	0.016	0.000	0.015
HS_refseq_to_agilent_wholegenome	0.176	0.000	0.177
HS_refseq_to_canonical_transcript_stable_id	0.068	0.000	0.070
HS_refseq_to_ccds	0.032	0.000	0.041
HS_refseq_to_codelink	0.032	0.004	0.038
HS_refseq_to_efg_agilent_sureprint_g3_ge_8x60k	0.004	0.000	0.003
HS_refseq_to_efg_agilent_wholegenome_4x44k_v1	0.004	0.000	0.003
HS_refseq_to_efg_agilent_wholegenome_4x44k_v2	0.004	0.000	0.002
HS_refseq_to_embl	0.668	0.008	0.676
HS_refseq_to_ensembl_exon_id	0.004	0.000	0.003
HS_refseq_to_ensembl_gene_id	0.056	0.000	0.056
HS_refseq_to_ensembl_peptide_id	0.048	0.004	0.051
HS_refseq_to_ensembl_transcript_id	0.144	0.000	0.144
HS_refseq_to_entrezgene	0.048	0.000	0.049
HS_refseq_to_hgnc_id	0.044	0.000	0.046
HS_refseq_to_hgnc_symbol	0.048	0.000	0.049
HS_refseq_to_hgnc_transcript_name	0.056	0.000	0.054
HS_refseq_to_illumina_humanht_12	0.056	0.000	0.056
HS_refseq_to_illumina_humanwg_6_v1	0.052	0.000	0.049
HS_refseq_to_illumina_humanwg_6_v2	0.044	0.000	0.044
HS_refseq_to_illumina_humanwg_6_v3	0.052	0.000	0.052
HS_refseq_to_interpro	0.184	0.000	0.182
HS_refseq_to_ipi	0.180	0.000	0.179
HS_refseq_to_merops	0.008	0.000	0.005
HS_refseq_to_pdb	0.104	0.000	0.104
HS_refseq_to_pfam	0.076	0.000	0.079
HS_refseq_to_phalanx_onearray	0.044	0.000	0.047
HS_refseq_to_protein_id	1.252	0.012	1.267
HS_refseq_to_refseq_dna	0.064	0.000	0.063
HS_refseq_to_refseq_genomic	0.004	0.000	0.002
HS_refseq_to_refseq_peptide	0.096	0.000	0.098
HS_refseq_to_rfam	0.036	0.000	0.039
HS_refseq_to_rfam_gene_name	0.000	0.000	0.001
HS_refseq_to_rfam_transcript_name	0.000	0.000	0.002
HS_refseq_to_smart	0.040	0.000	0.037
HS_refseq_to_tigrfam	0.004	0.000	0.006
HS_refseq_to_ucsc	0.100	0.000	0.106
HS_refseq_to_unigene	0.196	0.000	0.196
HS_refseq_to_uniprot_genename	0.04	0.00	0.04
HS_refseq_to_uniprot_genename_transcript_name	0.004	0.000	0.003
HS_refseq_to_uniprot_sptrembl	0.004	0.000	0.003
HS_refseq_to_uniprot_swissprot	0.004	0.000	0.002
HS_refseq_to_uniprot_swissprot_accession	0.004	0.000	0.002
HS_refseq_to_wikigene_id	0.000	0.000	0.003
HS_refseq_to_wikigene_name	0.048	0.000	0.317
MM_conv_id	0.004	0.000	0.003
MM_refseq_to_affy_mg_u74a	0.016	0.000	0.015
MM_refseq_to_affy_mg_u74av2	0.016	0.000	0.022
MM_refseq_to_affy_mg_u74b	0.012	0.000	0.011
MM_refseq_to_affy_mg_u74bv2	0.012	0.000	0.012
MM_refseq_to_affy_mg_u74c	0.004	0.000	0.005
MM_refseq_to_affy_mg_u74cv2	0.004	0.000	0.006
MM_refseq_to_affy_moe430a	0.024	0.004	0.030
MM_refseq_to_affy_moe430b	0.016	0.000	0.014
MM_refseq_to_affy_moex_1_0_st_v1	0.372	0.000	0.372
MM_refseq_to_affy_mogene_1_0_st_v1	0.040	0.000	0.041
MM_refseq_to_affy_mouse430_2	0.044	0.000	0.047
MM_refseq_to_affy_mouse430a_2	0.032	0.000	0.033
MM_refseq_to_affy_mu11ksuba	0.012	0.000	0.012
MM_refseq_to_affy_mu11ksubb	0.004	0.004	0.008
MM_refseq_to_agilent_wholegenome	0.064	0.000	0.065
MM_refseq_to_canonical_transcript_stable_id	0.060	0.000	0.111
MM_refseq_to_ccds	0.032	0.000	0.030
MM_refseq_to_codelink	0.032	0.000	0.033
MM_refseq_to_efg_agilent_sureprint_g3_ge_8x60k	0.004	0.000	0.003
MM_refseq_to_efg_agilent_wholegenome_4x44k_v1	0.004	0.000	0.002
MM_refseq_to_efg_agilent_wholegenome_4x44k_v2	0.064	0.000	0.063
MM_refseq_to_embl	0.284	0.000	0.288
MM_refseq_to_ensembl_exon_id	0.000	0.000	0.002
MM_refseq_to_ensembl_gene_id	0.036	0.000	0.037
MM_refseq_to_ensembl_peptide_id	0.036	0.000	0.037
MM_refseq_to_ensembl_transcript_id	0.036	0.000	0.039
MM_refseq_to_entrezgene	0.032	0.000	0.034
MM_refseq_to_fantom	0.164	0.000	0.164
MM_refseq_to_illumina_mousewg_6_v1	0.048	0.000	0.047
MM_refseq_to_illumina_mousewg_6_v2	0.048	0.000	0.049
MM_refseq_to_interpro	0.104	0.000	0.102
MM_refseq_to_ipi	0.004	0.000	0.002
MM_refseq_to_merops	0.004	0.000	0.005
MM_refseq_to_mgi_id	0.188	0.004	0.192
MM_refseq_to_mgi_symbol	0.036	0.000	0.038
MM_refseq_to_mgi_transcript_name	0.040	0.000	0.039
MM_refseq_to_pdb	0.008	0.000	0.010
MM_refseq_to_pfam	0.060	0.000	0.061
MM_refseq_to_phalanx_onearray	0.036	0.000	0.035
MM_refseq_to_protein_id	0.452	0.000	0.454
MM_refseq_to_refseq_dna	0.052	0.000	0.052
MM_refseq_to_refseq_peptide	0.068	0.000	0.070
MM_refseq_to_rfam	0.000	0.000	0.003
MM_refseq_to_rfam_gene_name	0.000	0.000	0.002
MM_refseq_to_rfam_transcript_name	0.004	0.000	0.002
MM_refseq_to_smart	0.028	0.000	0.029
MM_refseq_to_tigrfam	0.004	0.000	0.005
MM_refseq_to_ucsc	0.036	0.000	0.035
MM_refseq_to_unigene	0.040	0.004	0.047
MM_refseq_to_uniprot_genename	0.032	0.000	0.034
MM_refseq_to_uniprot_genename_transcript_name	0.000	0.000	0.003
MM_refseq_to_uniprot_sptrembl	0.000	0.000	0.003
MM_refseq_to_uniprot_swissprot	0.000	0.000	0.003
MM_refseq_to_uniprot_swissprot_accession	0.000	0.000	0.003
MM_refseq_to_wikigene_id	0.000	0.000	0.003
MM_refseq_to_wikigene_name	0.036	0.000	0.035
TBL2	1.040	0.080	1.123
TBL2_HS	1.584	0.104	1.715
TBL2_MM	0.876	0.084	0.962
conv_id	0.004	0.000	0.003
id_conv	0.032	0.000	0.031