davidTiling 1.4.0
Wolfgang Huber
| Snapshot Date: 2014-10-04 07:15:22 -0700 (Sat, 04 Oct 2014) | | URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_2_14/experiment/pkgs/davidTiling | | Last Changed Rev: 2799 / Revision: 3055 | | Last Changed Date: 2014-04-11 14:27:08 -0700 (Fri, 11 Apr 2014) |
| zin2 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | NotNeeded | OK | OK | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | OK | [ OK ] |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | OK | OK | OK |
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### Running command:
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### cd davidTiling.buildbin-libdir/davidTiling && zip -r ../../davidTiling_1.4.0.zip . & cd ../..
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Scanning files
adding: celfiles/ (256 bytes security) (stored 0%)
adding: celfiles/030505_totcDNA_15ug_affy.cel.gz (188 bytes security) (deflated 0%)
adding: celfiles/041119_S96genDNA_re-hybe.cel.gz (188 bytes security) (deflated 0%)
adding: celfiles/041120_S96genDNA_re-hybe.cel.gz (188 bytes security) (deflated 0%)
adding: celfiles/050409_totcDNA_14ug_no52.cel.gz (188 bytes security) (deflated 0%)
adding: celfiles/05_04_20_2xpolyA_NAP_2to1.cel.gz (188 bytes security) (deflated 0%)
adding: celfiles/05_04_26_2xpolyA_NAP2.cel.gz (188 bytes security) (deflated 0%)
adding: celfiles/05_04_27_2xpolyA_NAP3.cel.gz (188 bytes security) (deflated 0%)
adding: celfiles/09_11_04_S96_genDNA_16hrs_45C_noDMSO.cel.gz (188 bytes security) (deflated 0%)
adding: data/ (256 bytes security) (stored 0%)
adding: data/datalist (188 bytes security) (stored 0%)
adding: data/davidTiling.rda (188 bytes security) (deflated 0%)
adding: data/gff.rda (188 bytes security) (deflated 6%)
adding: data/probeAnno.rda (188 bytes security) (deflated 0%)
adding: data/yeastFeatures.R (188 bytes security) (deflated 49%)
adding: DESCRIPTION (188 bytes security) (deflated 41%)
adding: help/ (256 bytes security) (stored 0%)
adding: help/aliases.rds (188 bytes security) (stored 0%)
adding: help/AnIndex (188 bytes security) (deflated 51%)
adding: help/davidTiling.rdb (188 bytes security) (deflated 1%)
adding: help/davidTiling.rdx (188 bytes security) (stored 0%)
adding: help/paths.rds (188 bytes security) (stored 0%)
adding: html/ (256 bytes security) (stored 0%)
adding: html/00Index.html (188 bytes security) (deflated 65%)
adding: html/R.css (188 bytes security) (deflated 70%)
adding: INDEX (188 bytes security) (deflated 54%)
adding: MD5 (188 bytes security) (deflated 47%)
adding: Meta/ (256 bytes security) (stored 0%)
adding: Meta/data.rds (188 bytes security) (stored 0%)
adding: Meta/hsearch.rds (188 bytes security) (stored 0%)
adding: Meta/links.rds (188 bytes security) (stored 0%)
adding: Meta/nsInfo.rds (188 bytes security) (stored 0%)
adding: Meta/package.rds (188 bytes security) (stored 0%)
adding: Meta/Rd.rds (188 bytes security) (stored 0%)
adding: NAMESPACE (188 bytes security) (deflated 11%)
adding: R/ (256 bytes security) (stored 0%)
adding: R/davidTiling (188 bytes security) (deflated 41%)
adding: R/davidTiling.rdb (188 bytes security) (deflated 3%)
adding: R/davidTiling.rdx (188 bytes security) (stored 0%)
adding: scripts/ (256 bytes security) (stored 0%)
adding: scripts/analyzeNovelFiltered.R (188 bytes security) (deflated 57%)
adding: scripts/antisense-export.R (188 bytes security) (deflated 44%)
adding: scripts/antisense-GO.R (188 bytes security) (deflated 53%)
adding: scripts/antisense-UTR.R (188 bytes security) (deflated 68%)
adding: scripts/assessNorm.R (188 bytes security) (deflated 54%)
adding: scripts/blast_Spombe.R (188 bytes security) (deflated 47%)
adding: scripts/blast_threefunghi.R (188 bytes security) (deflated 53%)
adding: scripts/calcThreshold.R (188 bytes security) (deflated 52%)
adding: scripts/categorizeSegments.R (188 bytes security) (deflated 64%)
adding: scripts/divergentTranscription.R (188 bytes security) (deflated 63%)
adding: scripts/doQualityReport.R (188 bytes security) (deflated 67%)
adding: scripts/exportSegScore.R (188 bytes security) (deflated 30%)
adding: scripts/expressedFeatures.R (188 bytes security) (deflated 61%)
adding: scripts/fig1.R (188 bytes security) (deflated 63%)
adding: scripts/fig_modelselect.R (188 bytes security) (deflated 40%)
adding: scripts/fig_norm.R (188 bytes security) (deflated 54%)
adding: scripts/findORF.R (188 bytes security) (deflated 52%)
adding: scripts/lowTranscribedRegions.R (188 bytes security) (deflated 60%)
adding: scripts/make.R (188 bytes security) (deflated 53%)
adding: scripts/makecs.R (188 bytes security) (deflated 31%)
adding: scripts/makeProbeAnno.R (188 bytes security) (deflated 63%)
adding: scripts/mapProbesToGenome.sh (188 bytes security) (deflated 47%)
adding: scripts/normalize.R (188 bytes security) (deflated 56%)
adding: scripts/operons.R (188 bytes security) (deflated 43%)
adding: scripts/phastCons.R (188 bytes security) (deflated 52%)
adding: scripts/plotrtpcr.R (188 bytes security) (deflated 55%)
adding: scripts/readSegments.R (188 bytes security) (deflated 57%)
adding: scripts/sageVelculescu.R (188 bytes security) (deflated 52%)
adding: scripts/scoreSegments.R (188 bytes security) (deflated 52%)
adding: scripts/segConservation.R (188 bytes security) (deflated 53%)
adding: scripts/segment.R (188 bytes security) (deflated 60%)
adding: scripts/segSequencesWrite.R (188 bytes security) (deflated 46%)
adding: scripts/table-ncRNAs.R (188 bytes security) (deflated 39%)
adding: scripts/tableSegments.R (188 bytes security) (deflated 64%)
adding: scripts/transcriptionThruPromoters.R (188 bytes security) (deflated 53%)
adding: scripts/transferPostProbs2R.R (188 bytes security) (deflated 46%)
adding: scripts/uniqueInGenome.R (188 bytes security) (deflated 50%)
adding: scripts/utrmap.R (188 bytes security) (deflated 63%)
adding: scripts/viewAllSegs.R (188 bytes security) (deflated 56%)
adding: scripts/viewSegmentation.R (188 bytes security) (deflated 59%)
adding: scripts/weakProbesCluster.R (188 bytes security) (deflated 54%)
adding: scripts/workflowOverview.Rnw (188 bytes security) (deflated 62%)
adding: scripts/writeProbeSeqsFasta.R (188 bytes security) (deflated 50%)
adding: scripts/writeSegmentTable.R (188 bytes security) (deflated 61%)
adding: website/ (256 bytes security) (stored 0%)
adding: website/arrow_left.gif (188 bytes security) (deflated 13%)
adding: website/arrow_right.gif (188 bytes security) (deflated 13%)
adding: website/gff.txt.gz (188 bytes security) (deflated 0%)
adding: website/gffhash.dir.gz (188 bytes security) (deflated 0%)
adding: website/gffhash.pag.gz (188 bytes security) (deflated 0%)
adding: website/index.html (188 bytes security) (deflated 74%)
adding: website/myR2HTML.css (188 bytes security) (deflated 78%)
adding: website/segmentTableDescription.html (188 bytes security) (deflated 70%)
adding: website/viewYeastTilingArray.pl (188 bytes security) (deflated 73%)