BioC experimental data: CHECK report for bsseqData on petty

Package: bsseqData

Version: 0.2.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch bsseqData_0.2.0.tar.gz

StartedAt: 2014-10-04 08:54:37 -0700 (Sat, 04 Oct 2014)

EndedAt: 2014-10-04 08:57:24 -0700 (Sat, 04 Oct 2014)

EllapsedTime: 167.2 seconds

RetCode: 0

Status:  OK

CheckDir: bsseqData.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch bsseqData_0.2.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-2.14-data-experiment/meat/bsseqData.Rcheck’
* using R version 3.1.1 (2014-07-10)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘bsseqData/DESCRIPTION’ ... OK
* this is package ‘bsseqData’ version ‘0.2.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘bsseqData’ can be installed ... [60s/66s] OK
* checking installed package size ... NOTE
  installed size is 200.9Mb
  sub-directories of 1Mb or more:
    data   140.0Mb
    umtab   60.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [14s/14s] OK
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  ‘/Users/biocbuild/bbs-2.14-data-experiment/meat/bsseqData.Rcheck/00check.log’
for details.

* installing *source* package ‘bsseqData’ ...
** data
*** moving datasets to lazyload DB
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (bsseqData)

name	user	system	elapsed
BS.cancer.ex	2.292	0.255	2.547
BS.cancer.ex.fit	2.597	0.614	3.217
BS.cancer.ex.tstat	0.372	0.127	0.501
keepLoci.ex	0.010	0.002	0.012