BioC experimental data: CHECK report for FANTOM3and4CAGE on moscato2

Package: FANTOM3and4CAGE

Version: 1.0.0

Command: rm -rf FANTOM3and4CAGE.buildbin-libdir && mkdir FANTOM3and4CAGE.buildbin-libdir && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=FANTOM3and4CAGE.buildbin-libdir FANTOM3and4CAGE_1.0.0.tar.gz >FANTOM3and4CAGE-install.out 2>&1 && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD check --library=FANTOM3and4CAGE.buildbin-libdir --install="check:FANTOM3and4CAGE-install.out" --force-multiarch --no-vignettes --timings FANTOM3and4CAGE_1.0.0.tar.gz

StartedAt: 2014-10-04 09:54:20 -0700 (Sat, 04 Oct 2014)

EndedAt: 2014-10-04 09:55:57 -0700 (Sat, 04 Oct 2014)

EllapsedTime: 97.2 seconds

RetCode: 0

Status:  OK

CheckDir: FANTOM3and4CAGE.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf FANTOM3and4CAGE.buildbin-libdir && mkdir FANTOM3and4CAGE.buildbin-libdir && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=FANTOM3and4CAGE.buildbin-libdir FANTOM3and4CAGE_1.0.0.tar.gz >FANTOM3and4CAGE-install.out 2>&1 && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD check --library=FANTOM3and4CAGE.buildbin-libdir --install="check:FANTOM3and4CAGE-install.out" --force-multiarch --no-vignettes --timings FANTOM3and4CAGE_1.0.0.tar.gz
###
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* using log directory 'E:/biocbld/bbs-2.14-data-experiment/meat/FANTOM3and4CAGE.Rcheck'
* using R version 3.1.1 (2014-07-10)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'FANTOM3and4CAGE/DESCRIPTION' ... OK
* this is package 'FANTOM3and4CAGE' version '1.0.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'FANTOM3and4CAGE' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 34.6Mb
  sub-directories of 1Mb or more:
    data  34.3Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [24s] OK
Examples with CPU or elapsed time > 5s
                           user system elapsed
FANTOMtissueCAGEhuman     11.94   0.36   12.31
FANTOMtimecourseCAGEhuman  5.93   0.11    6.04
** running examples for arch 'x64' ... [20s] OK
Examples with CPU or elapsed time > 5s
                           user system elapsed
FANTOMtissueCAGEhuman     10.10   0.14   10.24
FANTOMtimecourseCAGEhuman  5.05   0.10    5.15
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  'E:/biocbld/bbs-2.14-data-experiment/meat/FANTOM3and4CAGE.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'FANTOM3and4CAGE' ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'FANTOM3and4CAGE' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'FANTOM3and4CAGE' as FANTOM3and4CAGE_1.0.0.zip
* DONE (FANTOM3and4CAGE)

name	user	system	elapsed
FANTOMhumanSamples	0.03	0.00	0.03
FANTOMmouseSamples	0	0	0
FANTOMtimecourseCAGEhuman	5.93	0.11	6.04
FANTOMtimecourseCAGEmouse	0.42	0.02	0.44
FANTOMtissueCAGEhuman	11.94	0.36	12.31
FANTOMtissueCAGEmouse	4.75	0.12	4.88

name	user	system	elapsed
FANTOMhumanSamples	0.03	0.00	0.03
FANTOMmouseSamples	0	0	0
FANTOMtimecourseCAGEhuman	5.05	0.10	5.15
FANTOMtimecourseCAGEmouse	0.53	0.01	0.54
FANTOMtissueCAGEhuman	10.10	0.14	10.24
FANTOMtissueCAGEmouse	3.83	0.10	3.93