BioC experimental data: CHECK report for COPDSexualDimorphism.data on moscato2

Package: COPDSexualDimorphism.data

Version: 1.0.0

Command: rm -rf COPDSexualDimorphism.data.buildbin-libdir && mkdir COPDSexualDimorphism.data.buildbin-libdir && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=COPDSexualDimorphism.data.buildbin-libdir COPDSexualDimorphism.data_1.0.0.tar.gz >COPDSexualDimorphism.data-install.out 2>&1 && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD check --library=COPDSexualDimorphism.data.buildbin-libdir --install="check:COPDSexualDimorphism.data-install.out" --force-multiarch --no-vignettes --timings COPDSexualDimorphism.data_1.0.0.tar.gz

StartedAt: 2014-10-04 09:30:30 -0700 (Sat, 04 Oct 2014)

EndedAt: 2014-10-04 09:36:22 -0700 (Sat, 04 Oct 2014)

EllapsedTime: 352.7 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: COPDSexualDimorphism.data.Rcheck

Warnings: 1

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf COPDSexualDimorphism.data.buildbin-libdir && mkdir COPDSexualDimorphism.data.buildbin-libdir && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=COPDSexualDimorphism.data.buildbin-libdir COPDSexualDimorphism.data_1.0.0.tar.gz >COPDSexualDimorphism.data-install.out 2>&1 && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD check --library=COPDSexualDimorphism.data.buildbin-libdir --install="check:COPDSexualDimorphism.data-install.out" --force-multiarch --no-vignettes --timings COPDSexualDimorphism.data_1.0.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'E:/biocbld/bbs-2.14-data-experiment/meat/COPDSexualDimorphism.data.Rcheck'
* using R version 3.1.1 (2014-07-10)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'COPDSexualDimorphism.data/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'COPDSexualDimorphism.data' version '1.0.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'COPDSexualDimorphism.data' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 34.5Mb
  sub-directories of 1Mb or more:
    data  34.3Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                 old_size new_size compress
  lgrc.eqtl.rda     1.3Mb    653Kb       xz
  lgrc.expr.rda    11.0Mb    7.6Mb       xz
  lgrc.genes.rda    640Kb    367Kb       xz
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [6s] OK
** running examples for arch 'x64' ... [4s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning.
NOTE: There was 1 note.
See
  'E:/biocbld/bbs-2.14-data-experiment/meat/COPDSexualDimorphism.data.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'COPDSexualDimorphism.data' ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'COPDSexualDimorphism.data' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'COPDSexualDimorphism.data' as COPDSexualDimorphism.data_1.0.0.zip
* DONE (COPDSexualDimorphism.data)

name	user	system	elapsed
COPDSexualDimorphism.data-package	0.41	0.03	0.44
lgrc.expr	1.10	0.02	3.88

name	user	system	elapsed
COPDSexualDimorphism.data-package	0.53	0.03	0.56
lgrc.expr	0.73	0.08	0.81