tkWidgets 1.42.0
J. Zhang
| Snapshot Date: 2014-10-07 17:20:37 -0700 (Tue, 07 Oct 2014) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_14/madman/Rpacks/tkWidgets | | Last Changed Rev: 88838 / Revision: 95116 | | Last Changed Date: 2014-04-11 14:07:21 -0700 (Fri, 11 Apr 2014) |
| zin2 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | OK | OK | OK | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK | OK |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | [ OK ] | OK |
| morelia | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | OK | OK |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch tkWidgets_1.42.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-2.14-bioc/meat/tkWidgets.Rcheck’
* using R version 3.1.1 (2014-07-10)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘tkWidgets/DESCRIPTION’ ... OK
* this is package ‘tkWidgets’ version ‘1.42.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘tkWidgets’ can be installed ... [5s/5s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' calls to packages already attached by Depends:
‘DynDoc’ ‘methods’ ‘tools’ ‘widgetTools’
Please remove these calls from your code.
Packages in Depends field not imported from:
‘DynDoc’ ‘methods’ ‘widgetTools’
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
See the information on DESCRIPTION files in the chapter ‘Creating R
packages’ of the ‘Writing R Extensions’ manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File ‘tkWidgets/R/zzz.R’:
.onLoad calls:
require("methods", quietly = TRUE)
require("widgetTools", quietly = TRUE)
require("DynDoc", quietly = TRUE)
require(Biobase)
Package startup functions should not change the search path.
See section ‘Good practice’ in '?.onAttach'.
.getPackNames: warning in .packages(all = TRUE): partial argument match
of 'all' to 'all.available'
.popPackList: warning in .packages(all = TRUE): partial argument match
of 'all' to 'all.available'
assignArgs: warning in assign("argsList", value, env = env): partial
argument match of 'env' to 'envir'
assignLineData: warning in assign("lineData", lineData, env = env):
partial argument match of 'env' to 'envir'
eExplorer : export: warning in assign(i, temp[[i]], env = .GlobalEnv):
partial argument match of 'env' to 'envir'
fileWizard : view: warning in read.table(file = args$file, head =
args$header, sep = args$sep, as.is = TRUE): partial argument match of
'head' to 'header'
fileWizard : finish: warning in read.table(file = args$file, head =
args$header, sep = args$sep, as.is = TRUE): partial argument match of
'head' to 'header'
finish: warning in assign(dataName, dataFile, env = .GlobalEnv):
partial argument match of 'env' to 'envir'
getRowNames: warning in read.table(file.name, sep = sep, nrow = 3,
header = header, skip = skip): partial argument match of 'nrow' to
'nrows'
objectBrowser : viewEnv: warning in ls(env = env, all = TRUE): partial
argument match of 'env' to 'envir'
objectBrowser : viewEnv: warning in ls(env = env, all = TRUE): partial
argument match of 'all' to 'all.names'
objectBrowser : doEnv: warning in ls(env = get(item)): partial argument
match of 'env' to 'envir'
objectBrowser : up: warning in ls(env = get(selectedObj)): partial
argument match of 'env' to 'envir'
objNameToList: warning in get(objNames[i], env = env): partial argument
match of 'env' to 'envir'
viewVignette : export: warning in assign(i, temp[[i]], env =
.GlobalEnv): partial argument match of 'env' to 'envir'
fileWizard : brows: no visible global function definition for ‘tkcmd’
objNameToList: no visible global function definition for
‘package.contents’
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [2s/2s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
NOTE: There were 2 notes.
See
‘/Users/biocbuild/bbs-2.14-bioc/meat/tkWidgets.Rcheck/00check.log’
for details.