lpNet 1.4.0
Bettina Knapp
| Snapshot Date: 2014-10-07 17:20:37 -0700 (Tue, 07 Oct 2014) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_14/madman/Rpacks/lpNet | | Last Changed Rev: 88838 / Revision: 95116 | | Last Changed Date: 2014-04-11 14:07:21 -0700 (Fri, 11 Apr 2014) |
| zin2 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | NotNeeded | OK | [ OK ] | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | OK | OK |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | OK | OK | OK |
| morelia | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | OK | OK |
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### Running command:
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### /home/biocbuild/bbs-2.14-bioc/R/bin/R CMD check --no-vignettes --timings lpNet_1.4.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-2.14-bioc/meat/lpNet.Rcheck’
* using R version 3.1.1 (2014-07-10)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘lpNet/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘lpNet’ version ‘1.4.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘lpNet’ can be installed ... [4s/4s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: CV.Rd:79-81: Dropping empty section \details
prepare_Rd: CV.Rd:93-95: Dropping empty section \note
prepare_Rd: CV.Rd:90-92: Dropping empty section \author
prepare_Rd: CV.Rd:87-89: Dropping empty section \references
prepare_Rd: CV.Rd:99-101: Dropping empty section \seealso
prepare_Rd: calcActivation.Rd:28-30: Dropping empty section \details
prepare_Rd: calcActivation.Rd:40-42: Dropping empty section \note
prepare_Rd: calcActivation.Rd:37-39: Dropping empty section \author
prepare_Rd: calcActivation.Rd:34-36: Dropping empty section \references
prepare_Rd: calcActivation.Rd:46-48: Dropping empty section \seealso
prepare_Rd: calcPrediction.Rd:59-61: Dropping empty section \details
prepare_Rd: calcPrediction.Rd:71-73: Dropping empty section \note
prepare_Rd: calcPrediction.Rd:68-70: Dropping empty section \author
prepare_Rd: calcPrediction.Rd:65-67: Dropping empty section \references
prepare_Rd: calcRangeLambda.Rd:25-27: Dropping empty section \details
prepare_Rd: calcRangeLambda.Rd:37-39: Dropping empty section \note
prepare_Rd: calcRangeLambda.Rd:34-36: Dropping empty section \author
prepare_Rd: calcRangeLambda.Rd:31-33: Dropping empty section \references
prepare_Rd: calcRangeLambda.Rd:43-45: Dropping empty section \seealso
prepare_Rd: doILP.Rd:53-55: Dropping empty section \details
prepare_Rd: doILP.Rd:65-67: Dropping empty section \note
prepare_Rd: doILP.Rd:62-64: Dropping empty section \author
prepare_Rd: doILP.Rd:59-61: Dropping empty section \references
prepare_Rd: doILP.Rd:71-73: Dropping empty section \seealso
prepare_Rd: getAdja.Rd:22-24: Dropping empty section \details
prepare_Rd: getAdja.Rd:34-36: Dropping empty section \note
prepare_Rd: getAdja.Rd:31-33: Dropping empty section \author
prepare_Rd: getAdja.Rd:28-30: Dropping empty section \references
prepare_Rd: getEdgeAnnot.Rd:22-24: Dropping empty section \details
prepare_Rd: getEdgeAnnot.Rd:34-36: Dropping empty section \note
prepare_Rd: getEdgeAnnot.Rd:31-33: Dropping empty section \author
prepare_Rd: getEdgeAnnot.Rd:28-30: Dropping empty section \references
prepare_Rd: getEdgeAnnot.Rd:40-42: Dropping empty section \seealso
prepare_Rd: getObsMat.Rd:31-33: Dropping empty section \details
prepare_Rd: getObsMat.Rd:43-45: Dropping empty section \note
prepare_Rd: getObsMat.Rd:40-42: Dropping empty section \author
prepare_Rd: getObsMat.Rd:37-39: Dropping empty section \references
prepare_Rd: getSampleAdja.Rd:37-39: Dropping empty section \details
prepare_Rd: getSampleAdja.Rd:49-51: Dropping empty section \note
prepare_Rd: getSampleAdja.Rd:46-48: Dropping empty section \author
prepare_Rd: getSampleAdja.Rd:43-45: Dropping empty section \references
prepare_Rd: lpNet-package.Rd:22-25: Dropping empty section \author
prepare_Rd: lpNet-package.Rd:34-37: Dropping empty section \seealso
prepare_Rd: lpNet-package.Rd:38-40: Dropping empty section \examples
prepare_Rd: summarizeRepl.Rd:22-24: Dropping empty section \details
prepare_Rd: summarizeRepl.Rd:34-36: Dropping empty section \note
prepare_Rd: summarizeRepl.Rd:31-33: Dropping empty section \author
prepare_Rd: summarizeRepl.Rd:28-30: Dropping empty section \references
prepare_Rd: summarizeRepl.Rd:40-41: Dropping empty section \seealso
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [3s/3s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
NOTE: There was 1 note.
See
‘/home/biocbuild/bbs-2.14-bioc/meat/lpNet.Rcheck/00check.log’
for details.