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BioC 2.14: BUILD BIN report for flowPeaks on morelia

This page was generated on 2014-10-08 09:05:37 -0700 (Wed, 08 Oct 2014).

Package 288/824HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
flowPeaks 1.6.0
Yongchao Ge
Snapshot Date: 2014-10-07 17:20:37 -0700 (Tue, 07 Oct 2014)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_14/madman/Rpacks/flowPeaks
Last Changed Rev: 88838 / Revision: 95116
Last Changed Date: 2014-04-11 14:07:21 -0700 (Fri, 11 Apr 2014)
zin2 Linux (Ubuntu 12.04.4 LTS) / x86_64  NotNeeded  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  OK  OK 
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK [ OK ]

Summary

Package: flowPeaks
Version: 1.6.0
Command: rm -rf flowPeaks.buildbin-libdir && mkdir flowPeaks.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh flowPeaks_1.6.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R flowPeaks.buildbin-libdir
StartedAt: 2014-10-08 02:54:26 -0700 (Wed, 08 Oct 2014)
EndedAt: 2014-10-08 02:54:39 -0700 (Wed, 08 Oct 2014)
EllapsedTime: 12.5 seconds
RetCode: 0
Status:  OK 
PackageFile: flowPeaks_1.6.0.tgz
PackageFileSize: 3.914 MiB

Command output

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##############################################################################
###
### Running command:
###
###   rm -rf flowPeaks.buildbin-libdir && mkdir flowPeaks.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh flowPeaks_1.6.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R flowPeaks.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=flowPeaks.buildbin-libdir flowPeaks_1.6.0.tar.gz'
>>>>>>> 

* installing *source* package ‘flowPeaks’ ...
** libs
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   `gsl-config --cflags`  -fPIC  -Wall -mtune=core2 -g -O2  -c Rpack.cpp -o Rpack.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   `gsl-config --cflags`  -fPIC  -Wall -mtune=core2 -g -O2  -c Rregistrate.cpp -o Rregistrate.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   `gsl-config --cflags`  -fPIC  -Wall -mtune=core2 -g -O2  -c VoronoiDiagramGenerator.cpp -o VoronoiDiagramGenerator.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   `gsl-config --cflags`  -fPIC  -Wall -mtune=core2 -g -O2  -c flowPeaks.cpp -o flowPeaks.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   `gsl-config --cflags`  -fPIC  -Wall -mtune=core2 -g -O2  -c func_collect.cpp -o func_collect.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   `gsl-config --cflags`  -fPIC  -Wall -mtune=core2 -g -O2  -c func_collect_supp.cpp -o func_collect_supp.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   `gsl-config --cflags`  -fPIC  -Wall -mtune=core2 -g -O2  -c gvector_gmatrix.cpp -o gvector_gmatrix.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   `gsl-config --cflags`  -fPIC  -Wall -mtune=core2 -g -O2  -c kd_tree.cpp -o kd_tree.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   `gsl-config --cflags`  -fPIC  -Wall -mtune=core2 -g -O2  -c kmns.cpp -o kmns.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o flowPeaks.so Rpack.o Rregistrate.o VoronoiDiagramGenerator.o flowPeaks.o func_collect.o func_collect_supp.o gvector_gmatrix.o kd_tree.o kmns.o -L/usr/local/lib -lgsl -lgslcblas -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.14-bioc/meat/flowPeaks.buildbin-libdir/flowPeaks/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (flowPeaks)


>>>>>>> 
>>>>>>> FIXING LINKS FOR flowPeaks.buildbin-libdir/flowPeaks/libs//flowPeaks.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libgcc_s.1.dylib" "flowPeaks.buildbin-libdir/flowPeaks/libs//flowPeaks.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libgfortran.3.dylib" "flowPeaks.buildbin-libdir/flowPeaks/libs//flowPeaks.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libreadline.5.2.dylib" "flowPeaks.buildbin-libdir/flowPeaks/libs//flowPeaks.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libreadline.dylib" "flowPeaks.buildbin-libdir/flowPeaks/libs//flowPeaks.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libquadmath.0.dylib" "flowPeaks.buildbin-libdir/flowPeaks/libs//flowPeaks.so"