BioC 2.14: CHECK report for flowFit on moscato2

Package: flowFit

Version: 1.2.0

Command: rm -rf flowFit.buildbin-libdir && mkdir flowFit.buildbin-libdir && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=flowFit.buildbin-libdir flowFit_1.2.0.tar.gz >flowFit-install.out 2>&1 && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD check --library=flowFit.buildbin-libdir --install="check:flowFit-install.out" --force-multiarch --no-vignettes --timings flowFit_1.2.0.tar.gz

StartedAt: 2014-10-08 01:04:11 -0700 (Wed, 08 Oct 2014)

EndedAt: 2014-10-08 01:06:41 -0700 (Wed, 08 Oct 2014)

EllapsedTime: 149.6 seconds

RetCode: 0

Status:  OK

CheckDir: flowFit.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf flowFit.buildbin-libdir && mkdir flowFit.buildbin-libdir && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=flowFit.buildbin-libdir flowFit_1.2.0.tar.gz >flowFit-install.out 2>&1 && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD check --library=flowFit.buildbin-libdir --install="check:flowFit-install.out" --force-multiarch --no-vignettes --timings flowFit_1.2.0.tar.gz
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* using log directory 'E:/biocbld/bbs-2.14-bioc/meat/flowFit.Rcheck'
* using R version 3.1.1 (2014-07-10)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'flowFit/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'flowFit' version '1.2.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'flowFit' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: 'methods'
  All declared Imports should be used.
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [31s] OK
Examples with CPU or elapsed time > 5s
                      user system elapsed
flowFit-package      12.87   0.09   13.21
proliferationFitting 12.27   0.04   12.31
** running examples for arch 'x64' ... [31s] OK
Examples with CPU or elapsed time > 5s
                      user system elapsed
flowFit-package      12.57   0.03   12.61
proliferationFitting 11.84   0.05   11.96
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  'E:/biocbld/bbs-2.14-bioc/meat/flowFit.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'flowFit' ...
** R
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'flowFit' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'flowFit' as flowFit_1.2.0.zip
* DONE (flowFit)

name	user	system	elapsed
flowFit-package	12.87	0.09	13.21
generationsDistance	0	0	0
getGenerations	0.82	0.02	0.82
logTicks	0.06	0.00	0.06
parentFitting	0.64	0.01	0.66
parentFittingData-class	0.10	0.00	0.09
proliferationFitting	12.27	0.04	12.31
proliferationFittingData-class	0.74	0.00	0.73
proliferationGrid	0.01	0.00	0.02
proliferationIndex	0.63	0.00	0.62

name	user	system	elapsed
flowFit-package	12.57	0.03	12.61
generationsDistance	0	0	0
getGenerations	0.83	0.00	0.83
logTicks	0.08	0.00	0.08
parentFitting	0.64	0.00	0.64
parentFittingData-class	0.07	0.00	0.07
proliferationFitting	11.84	0.05	11.96
proliferationFittingData-class	0.75	0.01	1.00
proliferationGrid	0	0	0
proliferationIndex	0.62	0.03	0.66