cummeRbund 2.6.1
Loyal A. Goff
| Snapshot Date: 2014-10-07 17:20:37 -0700 (Tue, 07 Oct 2014) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_14/madman/Rpacks/cummeRbund | | Last Changed Rev: 90779 / Revision: 95116 | | Last Changed Date: 2014-05-28 11:35:14 -0700 (Wed, 28 May 2014) |
| zin2 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | OK | OK | OK | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK | [ OK ] |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK | OK |
| morelia | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | OK | OK |
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### Running command:
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### cd cummeRbund.buildbin-libdir/cummeRbund && zip -r ../../cummeRbund_2.6.1.zip . & cd ../..
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adding: data/ (256 bytes security) (stored 0%)
adding: data/sampleData.RData (188 bytes security) (deflated 4%)
adding: DESCRIPTION (188 bytes security) (deflated 47%)
adding: doc/ (256 bytes security) (stored 0%)
adding: doc/cummeRbund-example-workflow.pdf (188 bytes security) (deflated 19%)
adding: doc/cummeRbund-example-workflow.R (188 bytes security) (deflated 84%)
adding: doc/cummeRbund-example-workflow.Rnw (188 bytes security) (deflated 62%)
adding: doc/cummeRbund-manual.pdf (188 bytes security) (deflated 51%)
adding: doc/cummeRbund-manual.R (188 bytes security) (deflated 86%)
adding: doc/cummeRbund-manual.Rnw (188 bytes security) (deflated 72%)
adding: doc/index.html (188 bytes security) (deflated 68%)
adding: extdata/ (256 bytes security) (stored 0%)
adding: extdata/.RData (188 bytes security) (stored 0%)
adding: extdata/cds.count_tracking (188 bytes security) (deflated 57%)
adding: extdata/cds.diff (188 bytes security) (deflated 85%)
adding: extdata/cds.fpkm_tracking (188 bytes security) (deflated 67%)
adding: extdata/cds.read_group_tracking (188 bytes security) (deflated 66%)
adding: extdata/cds_exp.diff (188 bytes security) (deflated 73%)
adding: extdata/chr1_snippet.gtf (188 bytes security) (deflated 95%)
adding: extdata/cuffData.db (188 bytes security) (deflated 66%)
adding: extdata/cuffData_schema.sql (188 bytes security) (deflated 89%)
adding: extdata/genes.count_tracking (188 bytes security) (deflated 62%)
adding: extdata/genes.fpkm_tracking (188 bytes security) (deflated 60%)
adding: extdata/genes.read_group_tracking (188 bytes security) (deflated 70%)
adding: extdata/gene_exp.diff (188 bytes security) (deflated 65%)
adding: extdata/isoforms.count_tracking (188 bytes security) (deflated 62%)
adding: extdata/isoforms.fpkm_tracking (188 bytes security) (deflated 68%)
adding: extdata/isoforms.read_group_tracking (188 bytes security) (deflated 72%)
adding: extdata/isoform_exp.diff (188 bytes security) (deflated 75%)
adding: extdata/promoters.diff (188 bytes security) (deflated 79%)
adding: extdata/read_groups.info (188 bytes security) (deflated 47%)
adding: extdata/run.info (188 bytes security) (deflated 31%)
adding: extdata/splicing.diff (188 bytes security) (deflated 82%)
adding: extdata/tss_groups.count_tracking (188 bytes security) (deflated 58%)
adding: extdata/tss_groups.fpkm_tracking (188 bytes security) (deflated 64%)
adding: extdata/tss_groups.read_group_tracking (188 bytes security) (deflated 67%)
adding: extdata/tss_group_exp.diff (188 bytes security) (deflated 70%)
adding: help/ (256 bytes security) (stored 0%)
adding: help/aliases.rds (188 bytes security) (stored 0%)
adding: help/AnIndex (188 bytes security) (deflated 83%)
adding: help/cummeRbund.rdb (188 bytes security) (deflated 2%)
adding: help/cummeRbund.rdx (188 bytes security) (stored 0%)
adding: help/paths.rds (188 bytes security) (stored 0%)
adding: html/ (256 bytes security) (stored 0%)
adding: html/00Index.html (188 bytes security) (deflated 88%)
adding: html/R.css (188 bytes security) (deflated 70%)
adding: INDEX (188 bytes security) (deflated 69%)
adding: MD5 (188 bytes security) (deflated 50%)
adding: Meta/ (256 bytes security) (stored 0%)
adding: Meta/data.rds (188 bytes security) (stored 0%)
adding: Meta/hsearch.rds (188 bytes security) (stored 0%)
adding: Meta/links.rds (188 bytes security) (stored 0%)
adding: Meta/nsInfo.rds (188 bytes security) (stored 0%)
adding: Meta/package.rds (188 bytes security) (stored 0%)
adding: Meta/Rd.rds (188 bytes security) (stored 0%)
adding: Meta/vignette.rds (188 bytes security) (stored 0%)
adding: NAMESPACE (188 bytes security) (deflated 60%)
adding: NEWS (188 bytes security) (deflated 61%)
adding: R/ (256 bytes security) (stored 0%)
adding: R/cummeRbund (188 bytes security) (deflated 41%)
adding: R/cummeRbund.rdb (188 bytes security) (deflated 36%)
adding: R/cummeRbund.rdx (188 bytes security) (deflated 3%)
adding: reports/ (256 bytes security) (stored 0%)
adding: reports/runReport.Rmd (188 bytes security) (deflated 55%)
adding: reports/runReport.Rnw (188 bytes security) (deflated 55%)