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BioC 2.14: BUILD BIN report for beadarray on petty

This page was generated on 2014-08-26 08:55:54 -0700 (Tue, 26 Aug 2014).

Package 70/824HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
beadarray 2.14.1
Mark Dunning
Snapshot Date: 2014-08-25 17:20:39 -0700 (Mon, 25 Aug 2014)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_14/madman/Rpacks/beadarray
Last Changed Rev: 91415 / Revision: 93596
Last Changed Date: 2014-06-15 12:18:18 -0700 (Sun, 15 Jun 2014)
zin2 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK [ OK ]
morelia Mac OS X Mavericks (10.9.2) / x86_64  OK  OK  OK  OK 

Summary

Package: beadarray
Version: 2.14.1
Command: rm -rf beadarray.buildbin-libdir && mkdir beadarray.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh beadarray_2.14.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R beadarray.buildbin-libdir
StartedAt: 2014-08-26 00:48:31 -0700 (Tue, 26 Aug 2014)
EndedAt: 2014-08-26 00:49:13 -0700 (Tue, 26 Aug 2014)
EllapsedTime: 42.0 seconds
RetCode: 0
Status:  OK 
PackageFile: beadarray_2.14.1.tgz
PackageFileSize: 4.271 MiB

Command output

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###
### Running command:
###
###   rm -rf beadarray.buildbin-libdir && mkdir beadarray.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh beadarray_2.14.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R beadarray.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=beadarray.buildbin-libdir beadarray_2.14.1.tar.gz'
>>>>>>> 

* installing *source* package ‘beadarray’ ...
** libs
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c BASH.c -o BASH.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c HULK.c -o HULK.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c determiningGridPositions.c -o determiningGridPositions.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c findAllOutliers.c -o findAllOutliers.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c imageProcessing.c -o imageProcessing.o
imageProcessing.c: In function ‘illuminaBackground’:
imageProcessing.c:88: warning: ignoring #pragma omp parallel
imageProcessing.c: In function ‘medianBackground’:
imageProcessing.c:135: warning: ignoring #pragma omp parallel
imageProcessing.c: In function ‘illuminaSharpen’:
imageProcessing.c:244: warning: ignoring #pragma omp parallel
imageProcessing.c:251: warning: ignoring #pragma omp parallel
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o beadarray.so BASH.o HULK.o determiningGridPositions.o findAllOutliers.o imageProcessing.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.14-bioc/meat/beadarray.buildbin-libdir/beadarray/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (beadarray)


>>>>>>> 
>>>>>>> FIXING LINKS FOR beadarray.buildbin-libdir/beadarray/libs//beadarray.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libgcc_s.1.dylib" "beadarray.buildbin-libdir/beadarray/libs//beadarray.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libgfortran.2.dylib" "beadarray.buildbin-libdir/beadarray/libs//beadarray.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libreadline.5.2.dylib" "beadarray.buildbin-libdir/beadarray/libs//beadarray.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libreadline.dylib" "beadarray.buildbin-libdir/beadarray/libs//beadarray.so"