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BioC 2.14: BUILD BIN report for XVector on petty

This page was generated on 2014-10-08 09:00:56 -0700 (Wed, 08 Oct 2014).

Package 822/824HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
XVector 0.4.0
H. Pages
Snapshot Date: 2014-10-07 17:20:37 -0700 (Tue, 07 Oct 2014)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_14/madman/Rpacks/XVector
Last Changed Rev: 88838 / Revision: 95116
Last Changed Date: 2014-04-11 14:07:21 -0700 (Fri, 11 Apr 2014)
zin2 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK  OK  WARNINGS 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  WARNINGS  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  WARNINGS [ OK ]
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  WARNINGS  OK 

Summary

Package: XVector
Version: 0.4.0
Command: rm -rf XVector.buildbin-libdir && mkdir XVector.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh XVector_0.4.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R XVector.buildbin-libdir
StartedAt: 2014-10-08 01:36:51 -0700 (Wed, 08 Oct 2014)
EndedAt: 2014-10-08 01:37:08 -0700 (Wed, 08 Oct 2014)
EllapsedTime: 17.0 seconds
RetCode: 0
Status:  OK 
PackageFile: XVector_0.4.0.tgz
PackageFileSize: 332.8 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf XVector.buildbin-libdir && mkdir XVector.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh XVector_0.4.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R XVector.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=XVector.buildbin-libdir XVector_0.4.0.tar.gz'
>>>>>>> 

* installing *source* package ‘XVector’ ...
** libs
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.1/Resources/library/IRanges/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c IRanges_stubs.c -o IRanges_stubs.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.1/Resources/library/IRanges/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c Ocopy_byteblocks.c -o Ocopy_byteblocks.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.1/Resources/library/IRanges/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c R_init_XVector.c -o R_init_XVector.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.1/Resources/library/IRanges/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c SharedDouble_class.c -o SharedDouble_class.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.1/Resources/library/IRanges/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c SharedInteger_class.c -o SharedInteger_class.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.1/Resources/library/IRanges/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c SharedRaw_class.c -o SharedRaw_class.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.1/Resources/library/IRanges/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c SharedVector_class.c -o SharedVector_class.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.1/Resources/library/IRanges/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c XRawList_comparison.c -o XRawList_comparison.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.1/Resources/library/IRanges/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c XVectorList_class.c -o XVectorList_class.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.1/Resources/library/IRanges/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c XVector_class.c -o XVector_class.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.1/Resources/library/IRanges/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c slice_methods.c -o slice_methods.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.1/Resources/library/IRanges/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c vector_copy.c -o vector_copy.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.1/Resources/library/IRanges/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c view_summarization_methods.c -o view_summarization_methods.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o XVector.so IRanges_stubs.o Ocopy_byteblocks.o R_init_XVector.o SharedDouble_class.o SharedInteger_class.o SharedRaw_class.o SharedVector_class.o XRawList_comparison.o XVectorList_class.o XVector_class.o slice_methods.o vector_copy.o view_summarization_methods.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.14-bioc/meat/XVector.buildbin-libdir/XVector/libs
** R
** inst
** preparing package for lazy loading
Creating a generic function for ‘toString’ from package ‘base’ in package ‘XVector’
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (XVector)


>>>>>>> 
>>>>>>> FIXING LINKS FOR XVector.buildbin-libdir/XVector/libs//XVector.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libgcc_s.1.dylib" "XVector.buildbin-libdir/XVector/libs//XVector.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libgfortran.2.dylib" "XVector.buildbin-libdir/XVector/libs//XVector.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libreadline.5.2.dylib" "XVector.buildbin-libdir/XVector/libs//XVector.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libreadline.dylib" "XVector.buildbin-libdir/XVector/libs//XVector.so"