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This page was generated on 2014-10-08 08:50:28 -0700 (Wed, 08 Oct 2014).
| Package 641/824 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||
| Rcpi 1.0.2 Nan Xiao
| zin2 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | NotNeeded | OK | [ OK ] | |||||
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | OK | OK | |||||
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | OK | OK | OK | |||||
| morelia | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | OK | OK |
| Package: Rcpi |
| Version: 1.0.2 |
| Command: /home/biocbuild/bbs-2.14-bioc/R/bin/R CMD check --no-vignettes --timings Rcpi_1.0.2.tar.gz |
| StartedAt: 2014-10-08 02:12:53 -0700 (Wed, 08 Oct 2014) |
| EndedAt: 2014-10-08 02:15:44 -0700 (Wed, 08 Oct 2014) |
| EllapsedTime: 171.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: Rcpi.Rcheck |
| Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-2.14-bioc/R/bin/R CMD check --no-vignettes --timings Rcpi_1.0.2.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-2.14-bioc/meat/Rcpi.Rcheck’ * using R version 3.1.1 (2014-07-10) * using platform: x86_64-unknown-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘Rcpi/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘Rcpi’ version ‘1.0.2’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘Rcpi’ can be installed ... [15s/15s] OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [15s/16s] OK * checking for unstated dependencies in tests ... OK * checking tests ... Running ‘runTests.R’ [8s/8s] [8s/9s] OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK
Rcpi.Rcheck/00install.out:
* installing *source* package ‘Rcpi’ ... ** R ** data *** moving datasets to lazyload DB ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (Rcpi)
Rcpi.Rcheck/Rcpi-Ex.timings:
| name | user | system | elapsed | |
| AA2DACOR | 0.008 | 0.008 | 0.016 | |
| AA3DMoRSE | 0.000 | 0.000 | 0.002 | |
| AAACF | 0.000 | 0.000 | 0.002 | |
| AABLOSUM100 | 0.004 | 0.000 | 0.001 | |
| AABLOSUM45 | 0.000 | 0.000 | 0.001 | |
| AABLOSUM50 | 0.000 | 0.000 | 0.002 | |
| AABLOSUM62 | 0.004 | 0.000 | 0.001 | |
| AABLOSUM80 | 0.000 | 0.000 | 0.002 | |
| AABurden | 0.000 | 0.000 | 0.002 | |
| AACPSA | 0.004 | 0.000 | 0.001 | |
| AAConn | 0.000 | 0.000 | 0.002 | |
| AAConst | 0.000 | 0.000 | 0.002 | |
| AADescAll | 0.004 | 0.000 | 0.002 | |
| AAEdgeAdj | 0.004 | 0.000 | 0.002 | |
| AAEigIdx | 0.000 | 0.000 | 0.001 | |
| AAFGC | 0.000 | 0.000 | 0.001 | |
| AAGETAWAY | 0.000 | 0.000 | 0.002 | |
| AAGeom | 0.004 | 0.000 | 0.002 | |
| AAInfo | 0.004 | 0.000 | 0.002 | |
| AAMOE2D | 0.000 | 0.000 | 0.001 | |
| AAMOE3D | 0.000 | 0.000 | 0.002 | |
| AAMetaInfo | 0.000 | 0.000 | 0.002 | |
| AAMolProp | 0.004 | 0.000 | 0.002 | |
| AAPAM120 | 0.000 | 0.000 | 0.001 | |
| AAPAM250 | 0.000 | 0.000 | 0.002 | |
| AAPAM30 | 0.004 | 0.000 | 0.002 | |
| AAPAM40 | 0.000 | 0.000 | 0.001 | |
| AAPAM70 | 0.000 | 0.000 | 0.002 | |
| AARDF | 0.004 | 0.000 | 0.002 | |
| AARandic | 0.000 | 0.000 | 0.001 | |
| AATopo | 0.000 | 0.000 | 0.002 | |
| AATopoChg | 0.000 | 0.004 | 0.002 | |
| AAWHIM | 0.000 | 0.000 | 0.001 | |
| AAWalk | 0.000 | 0.000 | 0.002 | |
| AAindex | 0.004 | 0.000 | 0.001 | |
| OptAA3d | 0 | 0 | 0 | |
| Rcpi-package | 0.000 | 0.000 | 0.001 | |
| acc | 0.016 | 0.000 | 0.015 | |
| calcDrugFPSim | 0.000 | 0.000 | 0.001 | |
| calcDrugMCSSim | 0.000 | 0.000 | 0.001 | |
| calcParProtGOSim | 0 | 0 | 0 | |
| calcParProtSeqSim | 0.000 | 0.000 | 0.001 | |
| calcTwoProtGOSim | 0 | 0 | 0 | |
| calcTwoProtSeqSim | 0 | 0 | 0 | |
| checkProt | 0.004 | 0.004 | 0.005 | |
| convMolFormat | 0 | 0 | 0 | |
| extractDrugAIO | 0.000 | 0.000 | 0.001 | |
| extractDrugALOGP | 0 | 0 | 0 | |
| extractDrugAminoAcidCount | 0.000 | 0.000 | 0.001 | |
| extractDrugApol | 0.000 | 0.000 | 0.001 | |
| extractDrugAromaticAtomsCount | 0.000 | 0.004 | 0.000 | |
| extractDrugAromaticBondsCount | 0.000 | 0.000 | 0.001 | |
| extractDrugAtomCount | 0 | 0 | 0 | |
| extractDrugAutocorrelationCharge | 0.000 | 0.000 | 0.001 | |
| extractDrugAutocorrelationMass | 0 | 0 | 0 | |
| extractDrugAutocorrelationPolarizability | 0.000 | 0.004 | 0.000 | |
| extractDrugBCUT | 0.000 | 0.000 | 0.001 | |
| extractDrugBPol | 0 | 0 | 0 | |
| extractDrugBondCount | 0.000 | 0.000 | 0.001 | |
| extractDrugCPSA | 0 | 0 | 0 | |
| extractDrugCarbonTypes | 0.004 | 0.000 | 0.000 | |
| extractDrugChiChain | 0.000 | 0.000 | 0.001 | |
| extractDrugChiCluster | 0 | 0 | 0 | |
| extractDrugChiPath | 0.000 | 0.000 | 0.001 | |
| extractDrugChiPathCluster | 0 | 0 | 0 | |
| extractDrugDescOB | 0.000 | 0.000 | 0.001 | |
| extractDrugECI | 0 | 0 | 0 | |
| extractDrugEstate | 0 | 0 | 0 | |
| extractDrugEstateComplete | 0 | 0 | 0 | |
| extractDrugExtended | 0.000 | 0.000 | 0.001 | |
| extractDrugExtendedComplete | 0.000 | 0.000 | 0.001 | |
| extractDrugFMF | 0 | 0 | 0 | |
| extractDrugFragmentComplexity | 0.000 | 0.000 | 0.001 | |
| extractDrugGraph | 0 | 0 | 0 | |
| extractDrugGraphComplete | 0.000 | 0.000 | 0.001 | |
| extractDrugGravitationalIndex | 0 | 0 | 0 | |
| extractDrugHBondAcceptorCount | 0 | 0 | 0 | |
| extractDrugHBondDonorCount | 0.000 | 0.000 | 0.001 | |
| extractDrugHybridization | 0.000 | 0.000 | 0.001 | |
| extractDrugHybridizationComplete | 0 | 0 | 0 | |
| extractDrugHybridizationRatio | 0 | 0 | 0 | |
| extractDrugIPMolecularLearning | 0.000 | 0.000 | 0.001 | |
| extractDrugKR | 0.000 | 0.000 | 0.001 | |
| extractDrugKRComplete | 0 | 0 | 0 | |
| extractDrugKappaShapeIndices | 0.000 | 0.000 | 0.001 | |
| extractDrugKierHallSmarts | 0 | 0 | 0 | |
| extractDrugLargestChain | 0 | 0 | 0 | |
| extractDrugLargestPiSystem | 0 | 0 | 0 | |
| extractDrugLengthOverBreadth | 0 | 0 | 0 | |
| extractDrugLongestAliphaticChain | 0 | 0 | 0 | |
| extractDrugMACCS | 0 | 0 | 0 | |
| extractDrugMACCSComplete | 0 | 0 | 0 | |
| extractDrugMDE | 0.004 | 0.000 | 0.000 | |
| extractDrugMannholdLogP | 0.000 | 0.000 | 0.001 | |
| extractDrugMomentOfInertia | 0 | 0 | 0 | |
| extractDrugOBFP2 | 0.000 | 0.000 | 0.001 | |
| extractDrugOBFP3 | 0 | 0 | 0 | |
| extractDrugOBFP4 | 0.000 | 0.000 | 0.001 | |
| extractDrugOBMACCS | 0 | 0 | 0 | |
| extractDrugPetitjeanNumber | 0.000 | 0.000 | 0.001 | |
| extractDrugPetitjeanShapeIndex | 0.004 | 0.000 | 0.000 | |
| extractDrugPubChem | 0.000 | 0.000 | 0.001 | |
| extractDrugPubChemComplete | 0 | 0 | 0 | |
| extractDrugRotatableBondsCount | 0.000 | 0.000 | 0.001 | |
| extractDrugRuleOfFive | 0 | 0 | 0 | |
| extractDrugShortestPath | 0.000 | 0.000 | 0.001 | |
| extractDrugShortestPathComplete | 0 | 0 | 0 | |
| extractDrugStandard | 0.000 | 0.000 | 0.001 | |
| extractDrugStandardComplete | 0.004 | 0.000 | 0.000 | |
| extractDrugTPSA | 0.000 | 0.000 | 0.001 | |
| extractDrugVABC | 0 | 0 | 0 | |
| extractDrugVAdjMa | 0 | 0 | 0 | |
| extractDrugWHIM | 0 | 0 | 0 | |
| extractDrugWeight | 0 | 0 | 0 | |
| extractDrugWeightedPath | 0.000 | 0.000 | 0.001 | |
| extractDrugWienerNumbers | 0 | 0 | 0 | |
| extractDrugXLogP | 0.000 | 0.000 | 0.001 | |
| extractDrugZagrebIndex | 0 | 0 | 0 | |
| extractPCMBLOSUM | 0.012 | 0.004 | 0.014 | |
| extractPCMDescScales | 0.016 | 0.000 | 0.017 | |
| extractPCMFAScales | 0.176 | 0.000 | 0.176 | |
| extractPCMMDSScales | 0.012 | 0.000 | 0.014 | |
| extractPCMPropScales | 0.020 | 0.000 | 0.019 | |
| extractPCMScales | 0.020 | 0.004 | 0.025 | |
| extractProtAAC | 0.004 | 0.000 | 0.005 | |
| extractProtAPAAC | 2.088 | 0.000 | 2.128 | |
| extractProtCTDC | 0.008 | 0.000 | 0.010 | |
| extractProtCTDD | 0.008 | 0.000 | 0.008 | |
| extractProtCTDT | 0.004 | 0.004 | 0.011 | |
| extractProtCTriad | 0.224 | 0.000 | 0.234 | |
| extractProtDC | 0.000 | 0.008 | 0.008 | |
| extractProtGeary | 0.192 | 0.000 | 0.193 | |
| extractProtMoran | 0.192 | 0.004 | 0.194 | |
| extractProtMoreauBroto | 0.184 | 0.012 | 0.193 | |
| extractProtPAAC | 0.9 | 0.0 | 0.9 | |
| extractProtPSSM | 0 | 0 | 0 | |
| extractProtPSSMAcc | 0.000 | 0.000 | 0.001 | |
| extractProtPSSMFeature | 0 | 0 | 0 | |
| extractProtQSO | 1.572 | 0.008 | 1.582 | |
| extractProtSOCN | 1.560 | 0.008 | 1.571 | |
| extractProtTC | 0.048 | 0.028 | 0.073 | |
| getCPI | 0.004 | 0.000 | 0.004 | |
| getDrug | 0 | 0 | 0 | |
| getFASTAFromKEGG | 0 | 0 | 0 | |
| getFASTAFromUniProt | 0 | 0 | 0 | |
| getMolFromCAS | 0.000 | 0.000 | 0.001 | |
| getMolFromChEMBL | 0 | 0 | 0 | |
| getMolFromDrugBank | 0 | 0 | 0 | |
| getMolFromKEGG | 0 | 0 | 0 | |
| getMolFromPubChem | 0.000 | 0.000 | 0.001 | |
| getPDBFromRCSBPDB | 0 | 0 | 0 | |
| getPPI | 0.004 | 0.000 | 0.004 | |
| getProt | 0 | 0 | 0 | |
| getSeqFromKEGG | 0 | 0 | 0 | |
| getSeqFromRCSBPDB | 0.000 | 0.000 | 0.001 | |
| getSeqFromUniProt | 0.004 | 0.000 | 0.000 | |
| getSmiFromChEMBL | 0.000 | 0.000 | 0.001 | |
| getSmiFromDrugBank | 0 | 0 | 0 | |
| getSmiFromKEGG | 0.000 | 0.000 | 0.001 | |
| getSmiFromPubChem | 0 | 0 | 0 | |
| readFASTA | 0.004 | 0.000 | 0.004 | |
| readMolFromSDF | 0.000 | 0.000 | 0.001 | |
| readMolFromSmi | 0 | 0 | 0 | |
| readPDB | 1.548 | 0.008 | 1.556 | |
| searchDrug | 0 | 0 | 0 | |
| segProt | 0.008 | 0.000 | 0.005 | |