BioC 2.14: CHECK report for OLIN on zin2

Package: OLIN

Version: 1.42.0

Command: /home/biocbuild/bbs-2.14-bioc/R/bin/R CMD check --no-vignettes --timings OLIN_1.42.0.tar.gz

StartedAt: 2014-10-08 01:31:20 -0700 (Wed, 08 Oct 2014)

EndedAt: 2014-10-08 01:32:25 -0700 (Wed, 08 Oct 2014)

EllapsedTime: 65.5 seconds

RetCode: 0

Status:  OK

CheckDir: OLIN.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-2.14-bioc/R/bin/R CMD check --no-vignettes --timings OLIN_1.42.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-2.14-bioc/meat/OLIN.Rcheck’
* using R version 3.1.1 (2014-07-10)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘OLIN/DESCRIPTION’ ... OK
* this is package ‘OLIN’ version ‘1.42.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘OLIN’ can be installed ... [3s/3s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Packages listed in more than one of Depends, Imports, Suggests, Enhances:
  ‘marray’ ‘methods’
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: ‘locfit’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
See the information on DESCRIPTION files in the chapter ‘Creating R
packages’ of the ‘Writing R Extensions’ manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [30s/30s] OK
Examples with CPU or elapsed time > 5s
       user system elapsed
olin 22.197  0.008  22.362
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There were 2 notes.
See
  ‘/home/biocbuild/bbs-2.14-bioc/meat/OLIN.Rcheck/00check.log’
for details.

* installing *source* package ‘OLIN’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (OLIN)

name	user	system	elapsed
anovaint	0.256	0.008	0.270
anovapin	0.168	0.004	0.175
anovaplate	0.152	0.008	0.161
anovaspatial	0.272	0.004	0.281
backgroundCorrect2	0.744	0.024	0.771
bas	0.072	0.000	0.071
colorbar.mxy	0.072	0.000	0.073
fdr.int	0.000	0.000	0.001
fdr.int2	0.000	0.000	0.001
fdr.spatial	0.000	0.000	0.001
fdr.spatial2	0.000	0.000	0.001
fgbg.visu	0.128	0.004	0.132
ino	0.396	0.004	0.399
lin	1.188	0.004	1.193
m2v	0.092	0.004	0.096
ma.matrix	0.392	0.000	0.395
ma.vector	0.452	0.004	0.461
mxy.abs.plot	0.152	0.000	0.155
mxy.plot	0.116	0.000	0.154
mxy2.plot	0.148	0.000	0.168
oin	1.244	0.000	1.251
olin	22.197	0.008	22.362
p.int	0	0	0
p.int2	0.000	0.000	0.001
p.spatial	0.004	0.000	0.001
p.spatial2	0.000	0.000	0.001
sig.mask	0.004	0.000	0.001
sigint.plot	0.000	0.000	0.001
sigint.plot2	0.000	0.004	0.001
sigxy.plot	0.000	0.000	0.001
sigxy.plot2	0.004	0.000	0.001
v2m	0.064	0.000	0.064