BioC 2.14: CHECK report for ELBOW on moscato2

Package: ELBOW

Version: 1.0.0

Command: rm -rf ELBOW.buildbin-libdir && mkdir ELBOW.buildbin-libdir && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ELBOW.buildbin-libdir ELBOW_1.0.0.tar.gz >ELBOW-install.out 2>&1 && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD check --library=ELBOW.buildbin-libdir --install="check:ELBOW-install.out" --force-multiarch --no-vignettes --timings ELBOW_1.0.0.tar.gz

StartedAt: 2014-10-08 00:48:58 -0700 (Wed, 08 Oct 2014)

EndedAt: 2014-10-08 00:49:57 -0700 (Wed, 08 Oct 2014)

EllapsedTime: 58.5 seconds

RetCode: 0

Status:  OK

CheckDir: ELBOW.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf ELBOW.buildbin-libdir && mkdir ELBOW.buildbin-libdir && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ELBOW.buildbin-libdir ELBOW_1.0.0.tar.gz >ELBOW-install.out 2>&1 && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD check --library=ELBOW.buildbin-libdir --install="check:ELBOW-install.out" --force-multiarch --no-vignettes --timings ELBOW_1.0.0.tar.gz
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* using log directory 'E:/biocbld/bbs-2.14-bioc/meat/ELBOW.Rcheck'
* using R version 3.1.1 (2014-07-10)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ELBOW/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ELBOW' version '1.0.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ELBOW' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [12s] OK
** running examples for arch 'x64' ... [14s] OK
Examples with CPU or elapsed time > 5s
                user system elapsed
do_elbow_rnaseq 5.24   0.08    5.32
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

install for i386

* installing *source* package 'ELBOW' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'ELBOW' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ELBOW' as ELBOW_1.0.0.zip
* DONE (ELBOW)

name	user	system	elapsed
ELBOW-package	1.13	0.00	1.14
analyze_elbow	1.09	0.00	1.09
do_elbow	0.11	0.00	0.11
do_elbow_rnaseq	4.49	0.03	4.54
elbow_variance	0.61	0.00	0.61
extract_working_sets	0.06	0.00	0.06
get_elbow_limma	0.60	0.01	0.61
get_pvalue	1.07	0.00	1.08
null_variance	0.72	0.00	0.72
plot_dataset	0.85	0.00	0.86
plot_elbow	1.11	0.00	1.11
replicates_to_fold	0.10	0.00	0.09

name	user	system	elapsed
ELBOW-package	1.28	0.01	1.31
analyze_elbow	1.13	0.00	1.14
do_elbow	0.10	0.02	0.11
do_elbow_rnaseq	5.24	0.08	5.32
elbow_variance	0.69	0.00	0.69
extract_working_sets	0.04	0.01	0.06
get_elbow_limma	0.68	0.00	0.69
get_pvalue	1.14	0.00	1.14
null_variance	0.95	0.00	0.96
plot_dataset	0.83	0.02	0.84
plot_elbow	1.28	0.00	1.28
replicates_to_fold	0.1	0.0	0.1