BioC 2.14: CHECK report for DMRforPairs on morelia

Package: DMRforPairs

Version: 1.0.2

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch DMRforPairs_1.0.2.tar.gz

StartedAt: 2014-10-07 22:27:57 -0700 (Tue, 07 Oct 2014)

EndedAt: 2014-10-07 22:33:02 -0700 (Tue, 07 Oct 2014)

EllapsedTime: 304.9 seconds

RetCode: 0

Status:  OK

CheckDir: DMRforPairs.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch DMRforPairs_1.0.2.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-2.14-bioc/meat/DMRforPairs.Rcheck’
* using R version 3.1.1 (2014-07-10)
* using platform: x86_64-apple-darwin13.1.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘DMRforPairs/DESCRIPTION’ ... OK
* this is package ‘DMRforPairs’ version ‘1.0.2’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘DMRforPairs’ can be installed ... [27s/27s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [25s/25s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘DMRforPairs’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (DMRforPairs)

name	user	system	elapsed
DMRforPairs	3.333	0.062	3.397
calc_stats	0.000	0.000	0.001
export_data	1.919	0.064	1.984
merge_classes	0.001	0.000	0.000
plot_annotate_custom_region	1.302	0.018	1.339
plot_annotate_gene	1.300	0.017	1.320
plot_annotate_probes	0.001	0.000	0.001
plot_annotate_region	1.589	0.025	1.618
regionfinder	0.000	0.000	0.001
testregion	0.001	0.001	0.000
tune_parameters	1.477	0.014	1.492