BioC 2.14: CHECK report for BiocInstaller on petty

Package: BiocInstaller

Version: 1.14.2

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch BiocInstaller_1.14.2.tar.gz

StartedAt: 2014-10-07 20:56:15 -0700 (Tue, 07 Oct 2014)

EndedAt: 2014-10-07 20:57:02 -0700 (Tue, 07 Oct 2014)

EllapsedTime: 46.8 seconds

RetCode: 0

Status:  OK

CheckDir: BiocInstaller.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch BiocInstaller_1.14.2.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-2.14-bioc/meat/BiocInstaller.Rcheck’
* using R version 3.1.1 (2014-07-10)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘BiocInstaller/DESCRIPTION’ ... OK
* this is package ‘BiocInstaller’ version ‘1.14.2’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘BiocInstaller’ can be installed ... [2s/2s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Unexported object imported by a ':::' call: ‘utils:::.clean_up_dependencies’
  See the note in ?`:::` about the use of this operator.
There are ::: calls to the package's namespace in its code. A package
  almost never needs to use ::: for its own objects:
  ‘.updateBioconductorPackageFinish’ ‘.updateFinish’
See the information on DESCRIPTION files in the chapter ‘Creating R
packages’ of the ‘Writing R Extensions’ manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... [10s/18s] OK
Examples with CPU or elapsed time > 5s
           user system elapsed
biocValid 8.199  0.829  16.769
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running ‘BiocInstaller_unit_tests.R’ [3s/4s]
 [4s/4s] OK
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  ‘/Users/biocbuild/bbs-2.14-bioc/meat/BiocInstaller.Rcheck/00check.log’
for details.

* installing *source* package ‘BiocInstaller’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
Bioconductor version 2.14 (BiocInstaller 1.14.2), ?biocLite for help
* DONE (BiocInstaller)

name	user	system	elapsed
BiocUpgrade	0.001	0.000	0.001
biocLite	0.052	0.002	0.055
biocUpdatePackages	0.001	0.000	0.002
biocValid	8.199	0.829	16.769
biocVersion	0.002	0.000	0.002
biocinstallRepos	0.006	0.000	0.006
packageGroups	0.221	0.010	0.245
useDevel	0.001	0.000	0.001