ACME 2.20.0
Sean Davis
| Snapshot Date: 2014-10-07 17:20:37 -0700 (Tue, 07 Oct 2014) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_14/madman/Rpacks/ACME | | Last Changed Rev: 88838 / Revision: 95116 | | Last Changed Date: 2014-04-11 14:07:21 -0700 (Fri, 11 Apr 2014) |
| zin2 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | NotNeeded | OK | OK | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | OK | OK |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | OK | OK | OK |
| morelia | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | OK | [ OK ] |
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### Running command:
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### rm -rf ACME.buildbin-libdir && mkdir ACME.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh ACME_2.20.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R ACME.buildbin-libdir
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>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=ACME.buildbin-libdir ACME_2.20.0.tar.gz'
>>>>>>>
* installing *source* package ‘ACME’ ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c windowChisq.c -o windowChisq.o
windowChisq.c:57:71: warning: & has lower precedence than >; > will be evaluated first [-Wparentheses]
while((xlocations[i]-xlocations[firstprobe-1] < (halfWindowSize)) &
^
windowChisq.c:57:71: note: place parentheses around the '>' expression to silence this warning
while((xlocations[i]-xlocations[firstprobe-1] < (halfWindowSize)) &
^
windowChisq.c:57:71: note: place parentheses around the & expression to evaluate it first
while((xlocations[i]-xlocations[firstprobe-1] < (halfWindowSize)) &
^
windowChisq.c:62:70: warning: & has lower precedence than <; < will be evaluated first [-Wparentheses]
while((xlocations[lastprobe+1]-xlocations[i] < (halfWindowSize)) &
^
windowChisq.c:62:70: note: place parentheses around the '<' expression to silence this warning
while((xlocations[lastprobe+1]-xlocations[i] < (halfWindowSize)) &
^
windowChisq.c:62:70: note: place parentheses around the & expression to evaluate it first
while((xlocations[lastprobe+1]-xlocations[i] < (halfWindowSize)) &
^
windowChisq.c:21:11: warning: unused variable 'xa' [-Wunused-variable]
double *xa,*xlocations,*xchivals;
^
windowChisq.c:86:20: warning: incompatible pointer types initializing 'DL_FUNC' (aka 'void *(*)()') with an expression of type 'SEXP (*)(SEXP, SEXP, SEXP, SEXP, SEXP)' [-Wincompatible-pointer-types]
{"windowChisq",&windowChisq,5},
^˜˜˜˜˜˜˜˜˜˜˜
4 warnings generated.
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o ACME.so windowChisq.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.14-bioc/meat/ACME.buildbin-libdir/ACME/libs
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for ‘print’ from package ‘base’ in package ‘ACME’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (ACME)
>>>>>>>
>>>>>>> FIXING LINKS FOR ACME.buildbin-libdir/ACME/libs//ACME.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libgcc_s.1.dylib" "ACME.buildbin-libdir/ACME/libs//ACME.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libgfortran.3.dylib" "ACME.buildbin-libdir/ACME/libs//ACME.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libreadline.5.2.dylib" "ACME.buildbin-libdir/ACME/libs//ACME.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libreadline.dylib" "ACME.buildbin-libdir/ACME/libs//ACME.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libquadmath.0.dylib" "ACME.buildbin-libdir/ACME/libs//ACME.so"