BioC experimental data: CHECK report for yeastGSData on moscato1

Package: yeastGSData

Version: 0.1.11

Command: rm -rf yeastGSData.buildbin-libdir && mkdir yeastGSData.buildbin-libdir && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=yeastGSData.buildbin-libdir yeastGSData_0.1.11.tar.gz >yeastGSData-install.out 2>&1 && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD check --library=yeastGSData.buildbin-libdir --install="check:yeastGSData-install.out" --force-multiarch --no-vignettes --timings yeastGSData_0.1.11.tar.gz && mv yeastGSData.buildbin-libdir/* yeastGSData.Rcheck/ && rmdir yeastGSData.buildbin-libdir

StartedAt: 2014-04-04 12:46:43 -0700 (Fri, 04 Apr 2014)

EndedAt: 2014-04-04 12:52:00 -0700 (Fri, 04 Apr 2014)

EllapsedTime: 317.3 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: yeastGSData.Rcheck

Warnings: 1

* using log directory 'D:/biocbld/bbs-2.13-data-experiment/meat/yeastGSData.Rcheck'
* using R version 3.0.3 (2014-03-06)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'yeastGSData/DESCRIPTION' ... OK
* this is package 'yeastGSData' version '0.1.11'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'yeastGSData' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 65.2Mb
  sub-directories of 1Mb or more:
    extdata  64.2Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... NOTE
prepare_Rd: BayesFactorNGS.Rd:24-25: Dropping empty section \source
prepare_Rd: BayesFactorNGS.Rd:26-27: Dropping empty section \references
prepare_Rd: BayesFactorPGS.Rd:24-25: Dropping empty section \source
prepare_Rd: BayesFactorPGS.Rd:26-27: Dropping empty section \references
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                     old_size new_size compress
  BayesFactorNGS.rda     46Kb     18Kb       xz
  BayesFactorPGS.rda     70Kb     32Kb       xz
  MIPSGS.rda             15Kb      9Kb       xz
  Mpact.rda             199Kb    136Kb    bzip2
  NEGGS.rda             600Kb     40Kb       xz
* checking examples ...
** running examples for arch 'i386' ... [6s] OK
Examples with CPU or elapsed time > 5s
      user system elapsed
NEGGS 5.42   0.15    5.57
** running examples for arch 'x64' ... [6s] OK
Examples with CPU or elapsed time > 5s
      user system elapsed
NEGGS 4.93   0.21    5.13
* checking PDF version of manual ... OK

WARNING: There was 1 warning.
NOTE: There were 2 notes.
See
  'D:/biocbld/bbs-2.13-data-experiment/meat/yeastGSData.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'yeastGSData' ...
** data
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

install for x64

* installing *source* package 'yeastGSData' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'yeastGSData' as yeastGSData_0.1.11.zip
* DONE (yeastGSData)

name	user	system	elapsed
BayesFactorNGS	0.01	0.02	0.03
BayesFactorPGS	0.02	0.00	0.01
BinaryGS	0	0	0
MIPSGS	0.01	0.00	0.02
Mpact	0.08	0.00	0.07
MpactEvidenceCodes	0.00	0.02	0.02
NEGGS	5.42	0.15	5.57
POSPS	0	0	0
PRS	0.02	0.00	0.02

name	user	system	elapsed
BayesFactorNGS	0.01	0.01	0.03
BayesFactorPGS	0.02	0.00	0.02
BinaryGS	0	0	0
MIPSGS	0.05	0.00	0.04
Mpact	0.06	0.00	0.06
MpactEvidenceCodes	0	0	0
NEGGS	4.93	0.21	5.13
POSPS	0.01	0.03	0.05
PRS	0.02	0.00	0.02