BioC experimental data: CHECK report for kidpack on moscato1

Package: kidpack

Version: 1.5.14

Command: rm -rf kidpack.buildbin-libdir && mkdir kidpack.buildbin-libdir && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=kidpack.buildbin-libdir kidpack_1.5.14.tar.gz >kidpack-install.out 2>&1 && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD check --library=kidpack.buildbin-libdir --install="check:kidpack-install.out" --force-multiarch --no-vignettes --timings kidpack_1.5.14.tar.gz && mv kidpack.buildbin-libdir/* kidpack.Rcheck/ && rmdir kidpack.buildbin-libdir

StartedAt: 2014-04-04 12:03:59 -0700 (Fri, 04 Apr 2014)

EndedAt: 2014-04-04 12:05:26 -0700 (Fri, 04 Apr 2014)

EllapsedTime: 86.8 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: kidpack.Rcheck

Warnings: 1

* using log directory 'D:/biocbld/bbs-2.13-data-experiment/meat/kidpack.Rcheck'
* using R version 3.0.3 (2014-03-06)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'kidpack/DESCRIPTION' ... OK
* this is package 'kidpack' version '1.5.14'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'kidpack' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 20.2Mb
  sub-directories of 1Mb or more:
    data  19.8Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: 'Biobase'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  Warning: large data files saved inefficiently:
                 size ASCII compress
  cloneanno.rda 742Kb FALSE     none
  spotanno.rda  1.4Mb FALSE     none
  Warning: package needs dependence on R (>= 2.10)
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [3s] OK
** running examples for arch 'x64' ... [3s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning.
NOTE: There were 2 notes.
See
  'D:/biocbld/bbs-2.13-data-experiment/meat/kidpack.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'kidpack' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

*** Deprecation warning ***:
The package 'kidpack' is deprecated and will not be supported after Bioconductor release 2.1.



install for x64

* installing *source* package 'kidpack' ...
** testing if installed package can be loaded

*** Deprecation warning ***:
The package 'kidpack' is deprecated and will not be supported after Bioconductor release 2.1.


* MD5 sums
packaged installation of 'kidpack' as kidpack_1.5.14.zip
* DONE (kidpack)

name	user	system	elapsed
eset	0.40	0.02	0.42
qua	1.38	0.04	1.42

name	user	system	elapsed
eset	0.45	0.00	0.45
qua	1.37	0.07	1.43