BioC experimental data: CHECK report for ind1KG on moscato1

Package: ind1KG

Version: 0.1.17

Command: rm -rf ind1KG.buildbin-libdir && mkdir ind1KG.buildbin-libdir && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ind1KG.buildbin-libdir ind1KG_0.1.17.tar.gz >ind1KG-install.out 2>&1 && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD check --library=ind1KG.buildbin-libdir --install="check:ind1KG-install.out" --force-multiarch --no-vignettes --timings ind1KG_0.1.17.tar.gz && mv ind1KG.buildbin-libdir/* ind1KG.Rcheck/ && rmdir ind1KG.buildbin-libdir

StartedAt: 2014-04-04 11:59:51 -0700 (Fri, 04 Apr 2014)

EndedAt: 2014-04-04 12:03:51 -0700 (Fri, 04 Apr 2014)

EllapsedTime: 240.2 seconds

RetCode: 0

Status:  OK

CheckDir: ind1KG.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.13-data-experiment/meat/ind1KG.Rcheck'
* using R version 3.0.3 (2014-03-06)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ind1KG/DESCRIPTION' ... OK
* this is package 'ind1KG' version '0.1.17'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ind1KG' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 181.4Mb
  sub-directories of 1Mb or more:
    data     149.8Mb
    pileups   30.5Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [27s] OK
Examples with CPU or elapsed time > 5s
       user system elapsed
n240  16.91   0.20   17.11
c6snp  5.88   0.05    5.92
** running examples for arch 'x64' ... [25s] OK
Examples with CPU or elapsed time > 5s
       user system elapsed
n240  14.67   0.14   14.81
c6snp  6.02   0.11    6.13
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  'D:/biocbld/bbs-2.13-data-experiment/meat/ind1KG.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'ind1KG' ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'ind1KG' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ind1KG' as ind1KG_0.1.17.zip
* DONE (ind1KG)

name	user	system	elapsed
c6snp	5.88	0.05	5.92
gw6c6.snp240	0.22	0.00	0.22
n240	16.91	0.20	17.11
oregdf	0	0	0
pup240_500k	1.62	0.06	1.68
pup240_disc	0.06	0.00	0.08
rsgdf	0	0	0
yri240_6	0.43	0.00	0.43

name	user	system	elapsed
c6snp	6.02	0.11	6.13
gw6c6.snp240	0.27	0.00	0.53
n240	14.67	0.14	14.81
oregdf	0.00	0.02	0.01
pup240_500k	1.47	0.05	1.51
pup240_disc	0.06	0.00	0.06
rsgdf	0.02	0.00	0.02
yri240_6	0.39	0.00	0.39