BioC experimental data: CHECK report for charmData on perceval

Package: charmData

Version: 0.99.9

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch charmData_0.99.9.tar.gz

StartedAt: 2014-04-04 10:20:12 -0700 (Fri, 04 Apr 2014)

EndedAt: 2014-04-04 10:23:13 -0700 (Fri, 04 Apr 2014)

EllapsedTime: 181.1 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: charmData.Rcheck

Warnings: 2

* using log directory ‘/Users/biocbuild/bbs-2.13-data-experiment/meat/charmData.Rcheck’
* using R version 3.0.3 (2014-03-06)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘charmData/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘charmData’ version ‘0.99.9’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘charmData’ can be installed ... [18s/21s] OK
* checking installed package size ... NOTE
  installed size is 48.7Mb
  sub-directories of 1Mb or more:
    data  48.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... WARNING
Subdirectory ‘data’ contains no data sets.
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... WARNING
Files not of a type allowed in a ‘data’ directory:
  ‘136421_532.xys’ ‘136421_635.xys’ ‘136600_532.xys’ ‘136600_635.xys’
  ‘3788602_532.xys’ ‘3788602_635.xys’ ‘3822402_532.xys’
  ‘3822402_635.xys’ ‘5739902_532.xys’ ‘5739902_635.xys’
  ‘5875602_532.xys’ ‘5875602_635.xys’
Please use e.g. ‘inst/extdata’ for non-R data files
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [17s/17s] OK
* checking PDF version of manual ... OK

WARNING: There were 2 warnings.
NOTE: There was 1 note.
See
  ‘/Users/biocbuild/bbs-2.13-data-experiment/meat/charmData.Rcheck/00check.log’
for details.

* installing *source* package ‘charmData’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (charmData)

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