BioC experimental data: CHECK report for bsseqData on perceval

Package: bsseqData

Version: 0.1.5

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch bsseqData_0.1.5.tar.gz

StartedAt: 2014-04-04 10:16:29 -0700 (Fri, 04 Apr 2014)

EndedAt: 2014-04-04 10:19:34 -0700 (Fri, 04 Apr 2014)

EllapsedTime: 185.5 seconds

RetCode: 0

Status:  OK

CheckDir: bsseqData.Rcheck

Warnings: 0

* using log directory ‘/Users/biocbuild/bbs-2.13-data-experiment/meat/bsseqData.Rcheck’
* using R version 3.0.3 (2014-03-06)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘bsseqData/DESCRIPTION’ ... OK
* this is package ‘bsseqData’ version ‘0.1.5’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘bsseqData’ can be installed ... [58s/66s] OK
* checking installed package size ... NOTE
  installed size is 200.9Mb
  sub-directories of 1Mb or more:
    data   140.0Mb
    umtab   60.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [17s/19s] OK
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  ‘/Users/biocbuild/bbs-2.13-data-experiment/meat/bsseqData.Rcheck/00check.log’
for details.

* installing *source* package ‘bsseqData’ ...
** data
*** moving datasets to lazyload DB
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (bsseqData)

name	user	system	elapsed
BS.cancer.ex	3.299	0.408	4.283
BS.cancer.ex.fit	3.054	0.922	4.489
BS.cancer.ex.tstat	0.362	0.219	0.621
keepLoci.ex	0.009	0.010	0.019