BioC experimental data: CHECK report for SomaticCancerAlterations on moscato1

Package: SomaticCancerAlterations

Version: 0.99.20

Command: rm -rf SomaticCancerAlterations.buildbin-libdir && mkdir SomaticCancerAlterations.buildbin-libdir && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=SomaticCancerAlterations.buildbin-libdir SomaticCancerAlterations_0.99.20.tar.gz >SomaticCancerAlterations-install.out 2>&1 && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD check --library=SomaticCancerAlterations.buildbin-libdir --install="check:SomaticCancerAlterations-install.out" --force-multiarch --no-vignettes --timings SomaticCancerAlterations_0.99.20.tar.gz && mv SomaticCancerAlterations.buildbin-libdir/* SomaticCancerAlterations.Rcheck/ && rmdir SomaticCancerAlterations.buildbin-libdir

StartedAt: 2014-04-04 12:36:41 -0700 (Fri, 04 Apr 2014)

EndedAt: 2014-04-04 12:42:10 -0700 (Fri, 04 Apr 2014)

EllapsedTime: 329.1 seconds

RetCode: 0

Status:  OK

CheckDir: SomaticCancerAlterations.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.13-data-experiment/meat/SomaticCancerAlterations.Rcheck'
* using R version 3.0.3 (2014-03-06)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'SomaticCancerAlterations/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'SomaticCancerAlterations' version '0.99.20'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'SomaticCancerAlterations' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [6s] OK
** running examples for arch 'x64' ... [10s] OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
** running tests for arch 'i386'
  Running 'test_all.R' [30s]
 [39s] OK
** running tests for arch 'x64'
  Running 'test_all.R' [44s]
 [44s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

install for i386

* installing *source* package 'SomaticCancerAlterations' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'SomaticCancerAlterations' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SomaticCancerAlterations' as SomaticCancerAlterations_0.99.20.zip
* DONE (SomaticCancerAlterations)

name	user	system	elapsed
all-data	0.42	0.00	0.42
all-functions	0.93	0.02	0.95

name	user	system	elapsed
all-data	0.41	0.00	0.40
all-functions	1.22	0.00	4.05