BioC experimental data: CHECK report for LungCancerLines on moscato1

Package: LungCancerLines

Version: 0.0.10

Command: rm -rf LungCancerLines.buildbin-libdir && mkdir LungCancerLines.buildbin-libdir && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=LungCancerLines.buildbin-libdir LungCancerLines_0.0.10.tar.gz >LungCancerLines-install.out 2>&1 && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD check --library=LungCancerLines.buildbin-libdir --install="check:LungCancerLines-install.out" --force-multiarch --no-vignettes --timings LungCancerLines_0.0.10.tar.gz && mv LungCancerLines.buildbin-libdir/* LungCancerLines.Rcheck/ && rmdir LungCancerLines.buildbin-libdir

StartedAt: 2014-04-04 12:06:55 -0700 (Fri, 04 Apr 2014)

EndedAt: 2014-04-04 12:09:16 -0700 (Fri, 04 Apr 2014)

EllapsedTime: 140.8 seconds

RetCode: 0

Status:  OK

CheckDir: LungCancerLines.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.13-data-experiment/meat/LungCancerLines.Rcheck'
* using R version 3.0.3 (2014-03-06)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'LungCancerLines/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'LungCancerLines' version '0.0.10'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'LungCancerLines' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: 'gmapR'
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ...
** running examples for arch 'i386' ... [4s] OK
** running examples for arch 'x64' ... [6s] OK
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  'D:/biocbld/bbs-2.13-data-experiment/meat/LungCancerLines.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'LungCancerLines' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

install for x64

* installing *source* package 'LungCancerLines' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'LungCancerLines' as LungCancerLines_0.0.10.zip
* DONE (LungCancerLines)

name	user	system	elapsed
LungCancerBamFiles	0.03	0.00	0.03
LungCancerFastqFiles	0	0	0
TP53Genome-package	0.01	0.01	0.03

name	user	system	elapsed
LungCancerBamFiles	0.07	0.00	0.07
LungCancerFastqFiles	0	0	0
TP53Genome-package	0.03	0.00	0.03