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BioC 2.13: BUILD BIN report for triplex on perceval

This page was generated on 2014-04-05 09:53:06 -0700 (Sat, 05 Apr 2014).

Package 722/750HostnameOS / ArchBUILDCHECKBUILD BIN
triplex 1.2.2
Jiri Hon
Snapshot Date: 2014-04-04 16:20:29 -0700 (Fri, 04 Apr 2014)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_13/madman/Rpacks/triplex
Last Changed Rev: 87259 / Revision: 88450
Last Changed Date: 2014-03-10 12:07:38 -0700 (Mon, 10 Mar 2014)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK [ OK ]

Summary

Package: triplex
Version: 1.2.2
Command: rm -rf triplex.buildbin-libdir && mkdir triplex.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh triplex_1.2.2.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R triplex.buildbin-libdir
StartedAt: 2014-04-05 05:41:58 -0700 (Sat, 05 Apr 2014)
EndedAt: 2014-04-05 05:42:18 -0700 (Sat, 05 Apr 2014)
EllapsedTime: 19.4 seconds
RetCode: 0
Status:  OK 
PackageFile: triplex_1.2.2.tgz
PackageFileSize: 606.2 KiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=triplex.buildbin-libdir triplex_1.2.2.tar.gz'
>>>>>>> 

* installing *source* package ‘triplex’ ...
** libs
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/XVector/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Biostrings/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c Biostrings_stubs.c -o Biostrings_stubs.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/XVector/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Biostrings/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c IRanges_stubs.c -o IRanges_stubs.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/XVector/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Biostrings/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c R_init_triplex.c -o R_init_triplex.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/XVector/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Biostrings/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c XVector_stubs.c -o XVector_stubs.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/XVector/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Biostrings/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c align.c -o align.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/XVector/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Biostrings/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c align_interface.c -o align_interface.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/XVector/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Biostrings/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c dl_list.c -o dl_list.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/XVector/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Biostrings/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c interval.c -o interval.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/XVector/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Biostrings/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c libtriplex.c -o libtriplex.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/XVector/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Biostrings/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c progress.c -o progress.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/XVector/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Biostrings/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c search.c -o search.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/XVector/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Biostrings/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c search_interface.c -o search_interface.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o triplex.so Biostrings_stubs.o IRanges_stubs.o R_init_triplex.o XVector_stubs.o align.o align_interface.o dl_list.o interval.o libtriplex.o progress.o search.o search_interface.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.13-bioc/meat/triplex.buildbin-libdir/triplex/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (triplex)


>>>>>>> 
>>>>>>> FIXING LINKS FOR triplex.buildbin-libdir/triplex/libs//triplex.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "triplex.buildbin-libdir/triplex/libs//triplex.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "triplex.buildbin-libdir/triplex/libs//triplex.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "triplex.buildbin-libdir/triplex/libs//triplex.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "triplex.buildbin-libdir/triplex/libs//triplex.so"