BioC 2.13: CHECK report for frma on moscato1

Package: frma

Version: 1.14.0

Command: rm -rf frma.buildbin-libdir && mkdir frma.buildbin-libdir && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=frma.buildbin-libdir frma_1.14.0.tar.gz >frma-install.out 2>&1 && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD check --library=frma.buildbin-libdir --install="check:frma-install.out" --force-multiarch --no-vignettes --timings frma_1.14.0.tar.gz && mv frma.buildbin-libdir/* frma.Rcheck/ && rmdir frma.buildbin-libdir

StartedAt: 2014-04-05 03:57:00 -0700 (Sat, 05 Apr 2014)

EndedAt: 2014-04-05 04:01:54 -0700 (Sat, 05 Apr 2014)

EllapsedTime: 294.0 seconds

RetCode: 0

Status:  OK

CheckDir: frma.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.13-bioc/meat/frma.Rcheck'
* using R version 3.0.3 (2014-03-06)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'frma/DESCRIPTION' ... OK
* this is package 'frma' version '1.14.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'frma' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Package listed in more than one of Depends, Imports, Suggests, Enhances:
  'Biobase'
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking for old-style vignette sources ... NOTE
Vignette sources only in 'inst/doc':
  'frma.Rnw'
A 'vignettes' directory will be required as from R 3.1.0
* checking examples ...
** running examples for arch 'i386' ... [39s] OK
Examples with CPU or elapsed time > 5s
         user system elapsed
GNUSE   13.74   0.18   16.18
barcode  7.12   0.08    7.41
frma     6.71   0.13    7.44
** running examples for arch 'x64' ... [35s] OK
Examples with CPU or elapsed time > 5s
         user system elapsed
GNUSE   12.07   0.18   12.25
barcode  7.20   0.00    7.21
frma     6.62   0.06    6.68
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There were 2 notes.
See
  'D:/biocbld/bbs-2.13-bioc/meat/frma.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'frma' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'frma' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'frma' as frma_1.14.0.zip
* DONE (frma)

name	user	system	elapsed
GNUSE	13.74	0.18	16.18
barcode	7.12	0.08	7.41
frma	6.71	0.13	7.44
frmaExpressionSet-class	0.44	0.01	0.45

name	user	system	elapsed
GNUSE	12.07	0.18	12.25
barcode	7.20	0.00	7.21
frma	6.62	0.06	6.68
frmaExpressionSet-class	0.8	0.0	0.8