VariantAnnotation 1.8.13
Valerie Obenchain
| Snapshot Date: 2014-04-04 16:20:29 -0700 (Fri, 04 Apr 2014) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_13/madman/Rpacks/VariantAnnotation | | Last Changed Rev: 87381 / Revision: 88450 | | Last Changed Date: 2014-03-12 15:13:34 -0700 (Wed, 12 Mar 2014) |
| zin1 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | OK | OK | |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | [ OK ] |
| perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK |
adding: DESCRIPTION (188 bytes security) (deflated 48%)
adding: doc/ (256 bytes security) (stored 0%)
adding: doc/filterVcf.bib (188 bytes security) (deflated 42%)
adding: doc/filterVcf.pdf (188 bytes security) (deflated 10%)
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adding: doc/VariantAnnotation.pdf (188 bytes security) (deflated 17%)
adding: doc/VariantAnnotation.R (188 bytes security) (deflated 77%)
adding: doc/VariantAnnotation.Rnw (188 bytes security) (deflated 62%)
adding: extdata/ (256 bytes security) (stored 0%)
adding: extdata/chr22.vcf.gz (188 bytes security) (deflated 0%)
adding: extdata/chr22.vcf.gz.tbi (188 bytes security) (deflated 3%)
adding: extdata/chr7-sub.vcf.gz (188 bytes security) (deflated 0%)
adding: extdata/chr7-sub.vcf.gz.tbi (188 bytes security) (deflated 5%)
adding: extdata/ex2.vcf (188 bytes security) (deflated 52%)
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adding: extdata/h1187-10k.vcf.gz.tbi (188 bytes security) (stored 0%)
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adding: INDEX (188 bytes security) (deflated 65%)
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adding: libs/i386/VariantAnnotation.dll (188 bytes security) (deflated 55%)
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adding: MD5 (188 bytes security) (deflated 50%)
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adding: NAMESPACE (188 bytes security) (deflated 62%)
adding: NEWS (188 bytes security) (deflated 61%)
adding: R/ (256 bytes security) (stored 0%)
adding: R/VariantAnnotation (188 bytes security) (deflated 41%)
adding: R/VariantAnnotation.rdb (188 bytes security) (deflated 36%)
adding: R/VariantAnnotation.rdx (188 bytes security) (deflated 5%)
adding: scripts/ (256 bytes security) (stored 0%)
adding: scripts/test_Rplinkseq.R (188 bytes security) (deflated 67%)
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adding: unitTests/cases/expand.vcf (188 bytes security) (deflated 68%)
adding: unitTests/cases/fewer-FORMAT-than-GENO.vcf (188 bytes security) (deflated 45%)
adding: unitTests/cases/FORMAT_header_no_SAMPLEs.vcf (188 bytes security) (deflated 47%)
adding: unitTests/cases/missing-FORMAT-metadata-elt.vcf (188 bytes security) (deflated 42%)
adding: unitTests/cases/mixedStructural.vcf (188 bytes security) (deflated 63%)
adding: unitTests/cases/negative_FORMAT_Number.vcf (188 bytes security) (deflated 64%)
adding: unitTests/cases/no_FORMAT_column.vcf (188 bytes security) (deflated 31%)
adding: unitTests/cases/no_GENO_row.vcf (188 bytes security) (deflated 43%)
adding: unitTests/cases/no_INFO_header.vcf (188 bytes security) (deflated 36%)
adding: unitTests/cases/unspecified_INFO_FORMAT_fields.vcf (188 bytes security) (deflated 51%)
adding: unitTests/cases/VarScan_header.vcf (188 bytes security) (deflated 58%)
adding: unitTests/test_expand-methods.R (188 bytes security) (deflated 62%)
adding: unitTests/test_filterVcf.R (188 bytes security) (deflated 79%)
adding: unitTests/test_genotypeToSnpMatrix.R (188 bytes security) (deflated 78%)
adding: unitTests/test_locateVariants-methods.R (188 bytes security) (deflated 76%)
adding: unitTests/test_predictCoding-methods.R (188 bytes security) (deflated 77%)
adding: unitTests/test_readVcf-methods.R (188 bytes security) (deflated 74%)
adding: unitTests/test_scanVcf.R (188 bytes security) (deflated 67%)
adding: unitTests/test_ScanVcfParam-class.R (188 bytes security) (deflated 73%)
adding: unitTests/test_SIFTandPolyPhen.R (188 bytes security) (deflated 66%)
adding: unitTests/test_snpSummary.R (188 bytes security) (deflated 66%)
adding: unitTests/test_summarizeVariants-methods.R (188 bytes security) (deflated 49%)
adding: unitTests/test_VCF-class.R (188 bytes security) (deflated 78%)
adding: unitTests/test_VRanges-class.R (188 bytes security) (deflated 76%)
adding: unitTests/test_writeVcf-methods.R (188 bytes security) (deflated 78%)