BioC 2.13: CHECK report for RCASPAR on moscato1

Package: RCASPAR

Version: 1.8.0

Command: rm -rf RCASPAR.buildbin-libdir && mkdir RCASPAR.buildbin-libdir && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=RCASPAR.buildbin-libdir RCASPAR_1.8.0.tar.gz >RCASPAR-install.out 2>&1 && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD check --library=RCASPAR.buildbin-libdir --install="check:RCASPAR-install.out" --force-multiarch --no-vignettes --timings RCASPAR_1.8.0.tar.gz && mv RCASPAR.buildbin-libdir/* RCASPAR.Rcheck/ && rmdir RCASPAR.buildbin-libdir

StartedAt: 2014-04-05 06:11:05 -0700 (Sat, 05 Apr 2014)

EndedAt: 2014-04-05 06:11:58 -0700 (Sat, 05 Apr 2014)

EllapsedTime: 52.8 seconds

RetCode: 0

Status:  OK

CheckDir: RCASPAR.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.13-bioc/meat/RCASPAR.Rcheck'
* using R version 3.0.3 (2014-03-06)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'RCASPAR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'RCASPAR' version '1.8.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'RCASPAR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking for old-style vignette sources ... NOTE
Vignette sources only in 'inst/doc':
  'RCASPAR.Rnw'
A 'vignettes' directory will be required as from R 3.1.0
* checking examples ...
** running examples for arch 'i386' ... [14s] OK
Examples with CPU or elapsed time > 5s
                  user system elapsed
STpredictor_xvBLH 11.3   0.07   11.61
** running examples for arch 'x64' ... [5s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  'D:/biocbld/bbs-2.13-bioc/meat/RCASPAR.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'RCASPAR' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'RCASPAR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'RCASPAR' as RCASPAR_1.8.0.zip
* DONE (RCASPAR)

name	user	system	elapsed
Bergamaschi	0.02	0.01	0.03
RCASPAR-package	0.85	0.00	0.84
STpredictor_BLH	0.11	0.00	0.11
STpredictor_xvBLH	11.30	0.07	11.61
deriv_weight_estimator_BLH	0.01	0.00	0.02
deriv_weight_estimator_BLH_noprior	0	0	0
kmplt	0	0	0
kmplt_svrl	0.01	0.00	0.02
logrnk	0.02	0.00	0.01
pltgamma	0	0	0
pltprior	0	0	0
simpson	0	0	0
survData	0	0	0
survivAURC	0.23	0.00	0.23
survivROC	0.08	0.00	0.08
trapezoid	0	0	0
weight_estimator_BLH	0	0	0
weight_estimator_BLH_noprior	0	0	0
weights_BLH	0	0	0
weights_xvBLH	0.09	0.00	0.10

name	user	system	elapsed
Bergamaschi	0.03	0.00	0.03
RCASPAR-package	1.04	0.00	1.33
STpredictor_BLH	0.12	0.00	0.13
STpredictor_xvBLH	1.25	0.00	1.93
deriv_weight_estimator_BLH	0.02	0.00	0.02
deriv_weight_estimator_BLH_noprior	0.01	0.00	0.01
kmplt	0.02	0.00	0.02
kmplt_svrl	0.03	0.00	0.03
logrnk	0.05	0.00	0.05
pltgamma	0.01	0.00	0.01
pltprior	0.02	0.00	0.02
simpson	0	0	0
survData	0	0	0
survivAURC	0.46	0.00	0.45
survivROC	0.14	0.00	0.14
trapezoid	0.01	0.00	0.01
weight_estimator_BLH	0	0	0
weight_estimator_BLH_noprior	0	0	0
weights_BLH	0.02	0.00	0.02
weights_xvBLH	0.14	0.01	0.16