Back to the "Multiple platform build/check report"

BioC experimental data: CHECK report for yeastGSData on petty

This page was generated on 2013-10-08 16:07:32 -0700 (Tue, 08 Oct 2013).

Package 154/156HostnameOS / ArchBUILDCHECKBUILD BIN
yeastGSData 0.1.10
R. Gentleman
Snapshot Date: 2013-10-08 10:15:19 -0700 (Tue, 08 Oct 2013)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/yeastGSData
Last Changed Rev: 2317 / Revision: 2510
Last Changed Date: 2013-04-03 15:11:40 -0700 (Wed, 03 Apr 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  WARNINGS 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK [ WARNINGS ] OK 

Summary

Package: yeastGSData
Version: 0.1.10
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch yeastGSData_0.1.10.tar.gz
StartedAt: 2013-10-08 14:32:44 -0700 (Tue, 08 Oct 2013)
EndedAt: 2013-10-08 14:36:38 -0700 (Tue, 08 Oct 2013)
EllapsedTime: 234.5 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: yeastGSData.Rcheck
Warnings: 1

Command output

* using log directory '/Users/biocbuild/bbs-2.12-data-experiment/meat/yeastGSData.Rcheck'
* using R version 3.0.1 (2013-05-16)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'yeastGSData/DESCRIPTION' ... OK
* this is package 'yeastGSData' version '0.1.10'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'yeastGSData' can be installed ... [7s/8s] OK
* checking installed package size ... NOTE
  installed size is 65.2Mb
  sub-directories of 1Mb or more:
    extdata  64.2Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... NOTE
prepare_Rd: BayesFactorNGS.Rd:24-25: Dropping empty section \source
prepare_Rd: BayesFactorNGS.Rd:26-27: Dropping empty section \references
prepare_Rd: BayesFactorPGS.Rd:24-25: Dropping empty section \source
prepare_Rd: BayesFactorPGS.Rd:26-27: Dropping empty section \references
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                     old_size new_size compress
  BayesFactorNGS.rda     46Kb     18Kb       xz
  BayesFactorPGS.rda     70Kb     32Kb       xz
  MIPSGS.rda             15Kb      9Kb       xz
  Mpact.rda             199Kb    136Kb    bzip2
  NEGGS.rda             600Kb     40Kb       xz
* checking examples ... [7s/7s] OK
Examples with CPU or elapsed time > 5s
       user system elapsed
NEGGS 5.653  0.213   5.865
* checking PDF version of manual ... OK

WARNING: There was 1 warning.
NOTE: There were 2 notes.
See
  '/Users/biocbuild/bbs-2.12-data-experiment/meat/yeastGSData.Rcheck/00check.log'
for details.

yeastGSData.Rcheck/00install.out:

* installing *source* package 'yeastGSData' ...
** data
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (yeastGSData)

yeastGSData.Rcheck/yeastGSData-Ex.timings:

nameusersystemelapsed
BayesFactorNGS0.0310.0020.033
BayesFactorPGS0.0110.0000.012
BinaryGS0.0060.0010.006
MIPSGS0.0210.0010.023
Mpact0.0970.0030.100
MpactEvidenceCodes0.0070.0000.007
NEGGS5.6530.2135.865
POSPS0.0290.0700.100
PRS0.0030.0030.007