BioC experimental data: CHECK report for simpIntLists on george2

Package: simpIntLists

Version: 0.99.4

Command: /home/biocbuild/bbs-2.12-bioc/R/bin/R CMD check --no-vignettes --timings simpIntLists_0.99.4.tar.gz

StartedAt: 2013-10-08 13:14:07 -0700 (Tue, 08 Oct 2013)

EndedAt: 2013-10-08 13:15:37 -0700 (Tue, 08 Oct 2013)

EllapsedTime: 90.0 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: simpIntLists.Rcheck

Warnings: 1

* using log directory ‘/home/biocbuild/bbs-2.12-data-experiment/meat/simpIntLists.Rcheck’
* using R version 3.0.1 (2013-05-16)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘simpIntLists/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘simpIntLists’ version ‘0.99.4’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘simpIntLists’ can be installed ... [1s/2s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                                            old_size new_size compress
  ArabidopsisBioGRIDInteractionEntrezId.rda     26Kb     19Kb    bzip2
  ArabidopsisBioGRIDInteractionOfficial.rda     34Kb     22Kb    bzip2
  ArabidopsisBioGRIDInteractionUniqueId.rda     32Kb     21Kb    bzip2
  C.ElegansBioGRIDInteractionEntrezId.rda       44Kb     32Kb    bzip2
  C.ElegansBioGRIDInteractionOfficial.rda       65Kb     38Kb    bzip2
  C.ElegansBioGRIDInteractionUniqueId.rda       64Kb     36Kb    bzip2
  FruitFlyBioGRIDInteractionEntrezId.rda       165Kb    112Kb    bzip2
  FruitFlyBioGRIDInteractionOfficial.rda       252Kb    139Kb    bzip2
  FruitFlyBioGRIDInteractionUniqueId.rda       208Kb    121Kb    bzip2
  HumanBioGRIDInteractionEntrezId.rda          222Kb    157Kb    bzip2
  HumanBioGRIDInteractionOfficial.rda          318Kb    190Kb    bzip2
  HumanBioGRIDInteractionUniqueId.rda           29Kb     18Kb    bzip2
  MouseBioGRIDInteractionEntrezId.rda           25Kb     20Kb    bzip2
  MouseBioGRIDInteractionOfficial.rda           34Kb     23Kb    bzip2
  S.PombeBioGRIDInteractionEntrezId.rda         55Kb     37Kb    bzip2
  S.PombeBioGRIDInteractionOfficial.rda         76Kb     44Kb    bzip2
  S.PombeBioGRIDInteractionUniqueId.rda         89Kb     43Kb    bzip2
  YeastBioGRIDInteractionEntrezId.rda          685Kb    469Kb    bzip2
  YeastBioGRIDInteractionOfficial.rda          958Kb    572Kb    bzip2
  YeastBioGRIDInteractionUniqueId.rda          903Kb    533Kb    bzip2
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... [15s/15s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning.
See
  ‘/home/biocbuild/bbs-2.12-data-experiment/meat/simpIntLists.Rcheck/00check.log’
for details.

* installing *source* package ‘simpIntLists’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (simpIntLists)

name	user	system	elapsed
ArabidopsisBioGRIDInteractionEntrezId	0.072	0.084	0.157
ArabidopsisBioGRIDInteractionOfficial	0.068	0.092	0.158
ArabidopsisBioGRIDInteractionUniqueId	0.104	0.064	0.170
C.ElegansBioGRIDInteractionEntrezId	0.116	0.108	0.225
C.ElegansBioGRIDInteractionOfficial	0.232	0.104	0.335
C.ElegansBioGRIDInteractionUniqueId	0.160	0.108	0.271
FruitFlyBioGRIDInteractionEntrezId	0.252	0.304	0.555
FruitFlyBioGRIDInteractionOfficial	0.352	0.352	0.710
FruitFlyBioGRIDInteractionUniqueId	0.516	0.324	0.845
HumanBioGRIDInteractionEntrezId	0.348	0.388	0.737
HumanBioGRIDInteractionOfficial	0.604	0.432	1.038
HumanBioGRIDInteractionUniqueId	0.072	0.052	0.125
MouseBioGRIDInteractionEntrezId	0.076	0.064	0.142
MouseBioGRIDInteractionOfficial	0.092	0.076	0.172
MouseBioGRIDInteractionUniqueId	0.036	0.008	0.044
S.PombeBioGRIDInteractionEntrezId	0.112	0.096	0.207
S.PombeBioGRIDInteractionOfficial	0.152	0.128	0.285
S.PombeBioGRIDInteractionUniqueId	0.228	0.120	0.351
YeastBioGRIDInteractionEntrezId	0.600	0.928	1.556
YeastBioGRIDInteractionOfficial	1.336	1.056	2.423
YeastBioGRIDInteractionUniqueId	1.472	1.136	2.611
findInteractionList	0.048	0.080	0.132
simpIntLists	0.388	0.084	0.475