BioC experimental data: CHECK report for pasilla on petty

Package: pasilla

Version: 0.2.16

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch pasilla_0.2.16.tar.gz

StartedAt: 2013-10-08 14:17:47 -0700 (Tue, 08 Oct 2013)

EndedAt: 2013-10-08 14:20:59 -0700 (Tue, 08 Oct 2013)

EllapsedTime: 192.5 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: pasilla.Rcheck

Warnings: 1

* using log directory '/Users/biocbuild/bbs-2.12-data-experiment/meat/pasilla.Rcheck'
* using R version 3.0.1 (2013-05-16)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'pasilla/DESCRIPTION' ... OK
* this is package 'pasilla' version '0.2.16'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'pasilla' can be installed ... [14s/14s] OK
* checking installed package size ... NOTE
  installed size is 23.4Mb
  sub-directories of 1Mb or more:
    extdata  22.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                     old_size new_size compress
  pasillaExons.RData     59Kb     22Kb       xz
  pasillaGenes.RData    502Kb    105Kb       xz
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... NONE
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning.
NOTE: There was 1 note.
See
  '/Users/biocbuild/bbs-2.12-data-experiment/meat/pasilla.Rcheck/00check.log'
for details.

* installing *source* package 'pasilla' ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (pasilla)