BioC experimental data: CHECK report for miRNATarget on george2

Package: miRNATarget

Version: 0.99.3

Command: /home/biocbuild/bbs-2.12-bioc/R/bin/R CMD check --no-vignettes --timings miRNATarget_0.99.3.tar.gz

StartedAt: 2013-10-08 13:03:07 -0700 (Tue, 08 Oct 2013)

EndedAt: 2013-10-08 13:04:46 -0700 (Tue, 08 Oct 2013)

EllapsedTime: 99.8 seconds

RetCode: 0

Status:  OK

CheckDir: miRNATarget.Rcheck

Warnings: 0

* using log directory ‘/home/biocbuild/bbs-2.12-data-experiment/meat/miRNATarget.Rcheck’
* using R version 3.0.1 (2013-05-16)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘miRNATarget/DESCRIPTION’ ... OK
* this is package ‘miRNATarget’ version ‘0.99.3’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘miRNATarget’ can be installed ... [4s/4s] OK
* checking installed package size ... NOTE
  installed size is 23.1Mb
  sub-directories of 1Mb or more:
    data  22.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... [39s/45s] OK
Examples with CPU or elapsed time > 5s
         user system elapsed
TBL2_HS 6.453  0.464     8.1
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  ‘/home/biocbuild/bbs-2.12-data-experiment/meat/miRNATarget.Rcheck/00check.log’
for details.

* installing *source* package ‘miRNATarget’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (miRNATarget)

name	user	system	elapsed
HS_conv_id	0.040	0.004	0.045
HS_refseq_to_affy_hc_g110	0.020	0.004	0.022
HS_refseq_to_affy_hg_focus	0.060	0.000	0.061
HS_refseq_to_affy_hg_u133_plus_2	0.332	0.004	0.338
HS_refseq_to_affy_hg_u133a	0.136	0.000	0.156
HS_refseq_to_affy_hg_u133a_2	0.096	0.000	0.094
HS_refseq_to_affy_hg_u133b	0.168	0.004	0.183
HS_refseq_to_affy_hg_u95a	0.080	0.000	0.097
HS_refseq_to_affy_hg_u95av2	0.072	0.004	0.080
HS_refseq_to_affy_hg_u95b	0.052	0.000	0.053
HS_refseq_to_affy_hg_u95c	0.048	0.000	0.048
HS_refseq_to_affy_hg_u95d	0.036	0.004	0.039
HS_refseq_to_affy_hg_u95e	0.044	0.000	0.078
HS_refseq_to_affy_huex_1_0_st_v2	3.312	0.088	3.714
HS_refseq_to_affy_hugene_1_0_st_v1	0.084	0.004	0.321
HS_refseq_to_affy_hugenefl	0.032	0.000	0.311
HS_refseq_to_affy_u133_x3p	0.152	0.008	0.483
HS_refseq_to_agilent_cgh_44b	0.068	0.000	0.077
HS_refseq_to_agilent_wholegenome	0.088	0.004	0.093
HS_refseq_to_canonical_transcript_stable_id	0.084	0.000	0.094
HS_refseq_to_ccds	0.072	0.004	0.108
HS_refseq_to_codelink	0.076	0.004	0.085
HS_refseq_to_embl	0.524	0.036	0.696
HS_refseq_to_ensembl_gene_id	0.164	0.000	0.349
HS_refseq_to_ensembl_peptide_id	0.196	0.000	0.200
HS_refseq_to_ensembl_transcript_id	0.224	0.000	0.225
HS_refseq_to_entrezgene	0.172	0.016	0.431
HS_refseq_to_hgnc_id	0.168	0.004	0.644
HS_refseq_to_hgnc_symbol	0.288	0.012	0.513
HS_refseq_to_hgnc_transcript_name	0.136	0.004	0.151
HS_refseq_to_illumina_humanht_12	0.124	0.000	0.156
HS_refseq_to_illumina_humanwg_6_v1	0.108	0.000	0.250
HS_refseq_to_illumina_humanwg_6_v2	0.092	0.004	0.195
HS_refseq_to_illumina_humanwg_6_v3	0.108	0.004	0.110
HS_refseq_to_interpro	0.164	0.016	0.185
HS_refseq_to_ipi	0.160	0.000	0.184
HS_refseq_to_merops	0.052	0.000	0.057
HS_refseq_to_pdb	0.088	0.000	0.101
HS_refseq_to_pfam	0.128	0.000	0.156
HS_refseq_to_phalanx_onearray	0.132	0.000	0.138
HS_refseq_to_protein_id	0.412	0.020	0.606
HS_refseq_to_refseq_dna	0.168	0.000	0.168
HS_refseq_to_refseq_genomic	0.056	0.000	0.056
HS_refseq_to_refseq_peptide	0.144	0.012	0.204
HS_refseq_to_rfam	0.080	0.004	0.098
HS_refseq_to_rfam_gene_name	0.004	0.000	0.009
HS_refseq_to_rfam_transcript_name	0.076	0.000	0.076
HS_refseq_to_smart	0.136	0.000	0.142
HS_refseq_to_tigrfam	0.084	0.000	0.083
HS_refseq_to_ucsc	0.116	0.004	0.119
HS_refseq_to_unigene	0.124	0.004	0.154
HS_refseq_to_uniprot_genename	0.116	0.000	0.122
HS_refseq_to_wikigene_name	0.084	0.000	0.086
MM_conv_id	0.012	0.000	0.010
MM_refseq_to_affy_mg_u74a	0.040	0.000	0.039
MM_refseq_to_affy_mg_u74av2	0.040	0.000	0.041
MM_refseq_to_affy_mg_u74b	0.132	0.000	0.129
MM_refseq_to_affy_mg_u74bv2	0.100	0.000	0.105
MM_refseq_to_affy_mg_u74c	0.092	0.000	0.091
MM_refseq_to_affy_mg_u74cv2	0.016	0.000	0.016
MM_refseq_to_affy_moe430a	0.141	0.008	0.147
MM_refseq_to_affy_moe430b	0.112	0.004	0.113
MM_refseq_to_affy_moex_1_0_st_v1	1.616	0.036	1.757
MM_refseq_to_affy_mogene_1_0_st_v1	0.084	0.000	0.087
MM_refseq_to_affy_mouse430_2	0.144	0.008	0.171
MM_refseq_to_affy_mouse430a_2	0.124	0.000	0.127
MM_refseq_to_affy_mu11ksuba	0.024	0.000	0.027
MM_refseq_to_affy_mu11ksubb	0.080	0.000	0.084
MM_refseq_to_agilent_wholegenome	0.160	0.004	0.174
MM_refseq_to_canonical_transcript_stable_id	0.148	0.004	0.158
MM_refseq_to_ccds	0.152	0.000	0.228
MM_refseq_to_codelink	0.140	0.008	0.150
MM_refseq_to_embl	0.368	0.012	0.387
MM_refseq_to_ensembl_gene_id	0.368	0.004	0.388
MM_refseq_to_ensembl_peptide_id	0.072	0.000	0.074
MM_refseq_to_ensembl_transcript_id	0.076	0.000	0.114
MM_refseq_to_entrezgene	0.064	0.004	0.201
MM_refseq_to_fantom	0.096	0.000	0.098
MM_refseq_to_illumina_mousewg_6_v1	0.092	0.004	0.370
MM_refseq_to_illumina_mousewg_6_v2	0.204	0.000	0.207
MM_refseq_to_interpro	0.140	0.004	0.144
MM_refseq_to_ipi	0.148	0.004	0.154
MM_refseq_to_merops	0.056	0.000	0.057
MM_refseq_to_mgi_id	0.128	0.012	0.191
MM_refseq_to_mgi_symbol	0.132	0.000	0.132
MM_refseq_to_mgi_transcript_name	0.080	0.000	0.083
MM_refseq_to_pdb	0.012	0.000	0.012
MM_refseq_to_pfam	0.068	0.004	0.074
MM_refseq_to_phalanx_onearray	0.128	0.000	0.130
MM_refseq_to_protein_id	0.324	0.016	0.370
MM_refseq_to_refseq_dna	0.124	0.004	0.129
MM_refseq_to_refseq_peptide	0.216	0.004	0.224
MM_refseq_to_rfam	0.004	0.000	0.006
MM_refseq_to_rfam_gene_name	0.012	0.000	0.012
MM_refseq_to_rfam_transcript_name	0.004	0.000	0.006
MM_refseq_to_smart	0.044	0.000	0.045
MM_refseq_to_tigrfam	0.012	0.000	0.011
MM_refseq_to_ucsc	0.072	0.004	0.114
MM_refseq_to_unigene	0.144	0.000	0.143
MM_refseq_to_uniprot_genename	0.096	0.000	0.115
MM_refseq_to_wikigene_name	0.072	0.000	0.074
TBL2	3.028	0.148	3.910
TBL2_HS	6.453	0.464	8.100
TBL2_MM	2.876	0.204	3.109
conv_id	0.008	0.000	0.011
id_conv	0.072	0.000	0.074