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hgu2beta7 1.2.7
Bioconductor Package Maintainer
Snapshot Date: 2013-01-17 10:15:10 -0800 (Thu, 17 Jan 2013)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/hgu2beta7
Last Changed Rev: 2168 / Revision: 2199
Last Changed Date: 2012-10-01 10:57:19 -0700 (Mon, 01 Oct 2012)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  WARNINGS 
lamb2 Linux (openSUSE 11.4) / x86_64  OK [ WARNINGS ]
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS  OK 
petty Mac OS X Leopard (10.5.8) / i386  OK  WARNINGS  OK 

Summary

Package: hgu2beta7
Version: 1.2.7
Command: /home/biocbuild/bbs-2.12-bioc/R/bin/R CMD check --no-vignettes --timings hgu2beta7_1.2.7.tar.gz
StartedAt: 2013-01-17 13:01:20 -0800 (Thu, 17 Jan 2013)
EndedAt: 2013-01-17 13:02:21 -0800 (Thu, 17 Jan 2013)
EllapsedTime: 60.5 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: hgu2beta7.Rcheck
Warnings: 3

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.12-data-experiment/meat/hgu2beta7.Rcheck’
* using R Under development (unstable) (2012-12-17 r61365)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘hgu2beta7/DESCRIPTION’ ... OK
* this is package ‘hgu2beta7’ version ‘1.2.7’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘hgu2beta7’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is  7.0Mb
  sub-directories of 1Mb or more:
    data   6.9Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... WARNING
Subdirectory ‘data’ contains no data sets.
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... WARNING
‘library’ or ‘require’ call not declared from: ‘annotate’
* checking contents of ‘data’ directory ... WARNING
Files not of a type allowed in a ‘data’ directory:
  ‘Rdata.rdb’ ‘Rdata.rds’ ‘Rdata.rdx’
Please use e.g. ‘inst/extdata’ for non-R data files
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK

WARNING: There were 3 warnings.
NOTE: There was 1 note.
See
  ‘/loc/home/biocbuild/bbs-2.12-data-experiment/meat/hgu2beta7.Rcheck/00check.log’
for details.

hgu2beta7.Rcheck/00install.out:

* installing *source* package ‘hgu2beta7’ ...
** R
** data
*** moving datasets to lazyload DB
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

* DONE (hgu2beta7)

hgu2beta7.Rcheck/hgu2beta7-Ex.timings:

nameusersystemelapsed
hgu2beta7ACCNUM0.6720.0200.691
hgu2beta7CHR0.2680.0080.275
hgu2beta7CHRLENGTHS0.0360.0000.037
hgu2beta7CHRLOC0.5560.0040.560
hgu2beta7ENZYME0.3920.0000.391
hgu2beta7ENZYME2PROBE0.0520.0000.053
hgu2beta7GENENAME0.4200.0000.417
hgu2beta7GO2.8280.0642.893
hgu2beta7GO2ALLPROBES1.1160.0321.146
hgu2beta7GO2PROBE0.0960.0000.096
hgu2beta7GRIF0.1600.0000.163
hgu2beta7LOCUSID0.1720.0000.171
hgu2beta7MAP0.1840.0000.184
hgu2beta7OMIM0.1960.0000.197
hgu2beta7ORGANISM0.0240.0000.022
hgu2beta7PATH0.2520.0000.253
hgu2beta7PATH2PROBE0.0280.0000.028
hgu2beta7PMID0.3760.0000.377
hgu2beta7PMID2PROBE1.440.001.44
hgu2beta7REFSEQ0.8400.0040.841
hgu2beta7SUMFUNC0.3920.0000.391
hgu2beta7SYMBOL0.2840.0040.291
hgu2beta7UNIGENE0.2760.0080.283