BioC experimental data: CHECK report for geneLenDataBase on petty

Package: geneLenDataBase

Version: 0.99.11

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch geneLenDataBase_0.99.11.tar.gz

StartedAt: 2013-10-08 13:58:03 -0700 (Tue, 08 Oct 2013)

EndedAt: 2013-10-08 14:07:32 -0700 (Tue, 08 Oct 2013)

EllapsedTime: 569.1 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: geneLenDataBase.Rcheck

Warnings: 1

* using log directory '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck'
* using R version 3.0.1 (2013-05-16)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'geneLenDataBase/DESCRIPTION' ... OK
* this is package 'geneLenDataBase' version '0.99.11'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'geneLenDataBase' can be installed ... [24s/25s] OK
* checking installed package size ... NOTE
  installed size is 100.3Mb
  sub-directories of 1Mb or more:
    data  99.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... WARNING
Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/anoCar1.ensGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/anoCar1.genscan.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/anoCar1.xenoRefGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/anoGam1.ensGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/anoGam1.geneid.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/anoGam1.genscan.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/apiMel1.genscan.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/apiMel2.ensGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/apiMel2.geneid.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/apiMel2.genscan.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/aplCal1.xenoRefGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/bosTau2.geneSymbol.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/bosTau2.geneid.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/bosTau2.genscan.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/bosTau2.refGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/bosTau2.sgpGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/bosTau3.ensGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/bosTau3.geneSymbol.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/bosTau3.geneid.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/bosTau3.genscan.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/bosTau3.refGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/bosTau3.sgpGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/bosTau4.ensGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/bosTau4.geneSymbol.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/bosTau4.genscan.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/bosTau4.nscanGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/bosTau4.refGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/braFlo1.xenoRefGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/caeJap1.xenoRefGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/caePb1.xenoRefGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/caePb2.xenoRefGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/caeRem2.xenoRefGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/caeRem3.xenoRefGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/calJac1.genscan.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/calJac1.nscanGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/calJac1.xenoRefGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/canFam1.ensGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/canFam1.geneSymbol.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/canFam1.genscan.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/canFam1.nscanGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/canFam1.refGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/canFam1.xenoRefGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/canFam2.ensGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/canFam2.geneSymbol.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/canFam2.genscan.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/canFam2.nscanGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/canFam2.refGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/canFam2.xenoRefGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/cavPor3.ensGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/cavPor3.genscan.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/cavPor3.nscanGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/cavPor3.xenoRefGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/cb1.xenoRefGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/cb3.xenoRefGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/ce2.geneSymbol.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/ce2.geneid.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/ce2.refGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/ce4.geneSymbol.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/ce4.refGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/ce4.xenoRefGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/ce6.ensGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/ce6.geneSymbol.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/ce6.refGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/ce6.xenoRefGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/ci1.geneSymbol.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/ci1.refGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/ci1.xenoRefGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/ci2.ensGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/ci2.geneSymbol.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/ci2.refGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/ci2.xenoRefGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/danRer3.ensGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/danRer3.geneSymbol.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/danRer3.refGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/danRer4.ensGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/danRer4.geneSymbol.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/danRer4.genscan.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/danRer4.nscanGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/danRer4.refGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/danRer5.ensGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/danRer5.geneSymbol.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/danRer5.refGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/danRer5.vegaGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/danRer5.vegaPseudoGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/danRer6.ensGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/danRer6.geneSymbol.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/danRer6.refGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/danRer6.xenoRefGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/dm1.geneSymbol.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/dm1.genscan.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/dm1.refGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/dm2.geneSymbol.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/dm2.geneid.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/dm2.genscan.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/dm2.nscanGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/dm2.refGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/dm3.geneSymbol.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/dm3.nscanPasaGene.LENGTH.Rd':
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Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/dm3.refGene.LENGTH.Rd':
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Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/equCab2.xenoRefGene.LENGTH.Rd':
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Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/felCat3.xenoRefGene.LENGTH.Rd':
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Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/galGal3.nscanGene.LENGTH.Rd':
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Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/galGal3.xenoRefGene.LENGTH.Rd':
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Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/hg16.acembly.LENGTH.Rd':
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Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/hg16.exoniphy.LENGTH.Rd':
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Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/hg17.acembly.LENGTH.Rd':
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Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/hg17.acescan.LENGTH.Rd':
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Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/hg17.exoniphy.LENGTH.Rd':
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Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/hg18.knownGene.LENGTH.Rd':
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Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/sacCer2.ensGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/strPur1.geneSymbol.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/strPur1.genscan.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/strPur1.refGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/strPur1.xenoRefGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/strPur2.geneSymbol.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/strPur2.genscan.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/strPur2.refGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/strPur2.xenoRefGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/taeGut1.ensGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/taeGut1.geneSymbol.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/taeGut1.genscan.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/taeGut1.nscanGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/taeGut1.refGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/taeGut1.xenoRefGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/tetNig1.ensGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/tetNig1.geneid.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/tetNig1.genscan.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/tetNig1.nscanGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/tetNig2.ensGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/xenTro1.genscan.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/xenTro2.ensGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/xenTro2.geneSymbol.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/xenTro2.genscan.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link or links in documentation object '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00_pkg_src/geneLenDataBase/man/xenTro2.refGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

See the information in section 'Cross-references' of the 'Writing R
Extensions' manual.

* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [116s/118s] OK
* checking PDF version of manual ... OK

WARNING: There was 1 warning.
NOTE: There was 1 note.
See
  '/Users/biocbuild/bbs-2.12-data-experiment/meat/geneLenDataBase.Rcheck/00check.log'
for details.

* installing *source* package 'geneLenDataBase' ...
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (geneLenDataBase)

name	user	system	elapsed
anoCar1.ensGene.LENGTH	0.150	0.008	0.189
anoCar1.genscan.LENGTH	0.089	0.006	0.095
anoCar1.xenoRefGene.LENGTH	1.855	0.023	1.878
anoGam1.ensGene.LENGTH	0.104	0.007	0.112
anoGam1.geneid.LENGTH	0.079	0.005	0.085
anoGam1.genscan.LENGTH	0.082	0.006	0.088
apiMel1.genscan.LENGTH	0.066	0.004	0.070
apiMel2.ensGene.LENGTH	0.171	0.005	0.176
apiMel2.geneid.LENGTH	0.090	0.005	0.096
apiMel2.genscan.LENGTH	0.067	0.004	0.072
aplCal1.xenoRefGene.LENGTH	1.305	0.016	1.324
bosTau2.geneSymbol.LENGTH	0.097	0.005	0.102
bosTau2.geneid.LENGTH	0.830	0.010	0.841
bosTau2.genscan.LENGTH	0.171	0.008	0.422
bosTau2.refGene.LENGTH	0.098	0.005	0.109
bosTau2.sgpGene.LENGTH	0.222	0.006	0.228
bosTau3.ensGene.LENGTH	0.229	0.008	0.236
bosTau3.geneSymbol.LENGTH	0.064	0.005	0.070
bosTau3.geneid.LENGTH	0.206	0.006	0.213
bosTau3.genscan.LENGTH	0.129	0.007	0.137
bosTau3.refGene.LENGTH	0.064	0.004	0.068
bosTau3.sgpGene.LENGTH	0.174	0.007	0.181
bosTau4.ensGene.LENGTH	0.187	0.004	0.192
bosTau4.geneSymbol.LENGTH	0.069	0.005	0.074
bosTau4.genscan.LENGTH	0.140	0.008	0.159
bosTau4.nscanGene.LENGTH	0.366	0.011	0.376
bosTau4.refGene.LENGTH	0.057	0.004	0.061
braFlo1.xenoRefGene.LENGTH	0.718	0.019	0.738
caeJap1.xenoRefGene.LENGTH	0.673	0.016	0.690
caePb1.xenoRefGene.LENGTH	0.824	0.010	0.835
caePb2.xenoRefGene.LENGTH	0.737	0.008	0.746
caeRem2.xenoRefGene.LENGTH	0.636	0.008	0.644
caeRem3.xenoRefGene.LENGTH	0.584	0.009	0.593
calJac1.genscan.LENGTH	0.180	0.008	0.189
calJac1.nscanGene.LENGTH	0.224	0.008	0.232
calJac1.xenoRefGene.LENGTH	1.112	0.011	1.125
canFam1.ensGene.LENGTH	0.194	0.005	0.199
canFam1.geneSymbol.LENGTH	0.026	0.002	0.028
canFam1.genscan.LENGTH	0.129	0.005	0.134
canFam1.nscanGene.LENGTH	0.402	0.005	0.408
canFam1.refGene.LENGTH	0.010	0.003	0.012
canFam1.xenoRefGene.LENGTH	0.867	0.010	0.895
canFam2.ensGene.LENGTH	0.180	0.005	0.186
canFam2.geneSymbol.LENGTH	0.022	0.004	0.026
canFam2.genscan.LENGTH	0.107	0.005	0.112
canFam2.nscanGene.LENGTH	0.129	0.005	0.135
canFam2.refGene.LENGTH	0.054	0.003	0.058
canFam2.xenoRefGene.LENGTH	0.940	0.012	0.952
cavPor3.ensGene.LENGTH	0.146	0.007	0.153
cavPor3.genscan.LENGTH	0.207	0.006	0.214
cavPor3.nscanGene.LENGTH	0.136	0.006	0.142
cavPor3.xenoRefGene.LENGTH	1.000	0.017	1.017
cb1.xenoRefGene.LENGTH	0.655	0.014	0.669
cb3.xenoRefGene.LENGTH	0.602	0.013	0.616
ce2.geneSymbol.LENGTH	0.124	0.007	0.132
ce2.geneid.LENGTH	0.117	0.006	0.124
ce2.refGene.LENGTH	0.137	0.006	0.143
ce4.geneSymbol.LENGTH	0.165	0.007	0.173
ce4.refGene.LENGTH	0.119	0.007	0.125
ce4.xenoRefGene.LENGTH	0.138	0.007	0.145
ce6.ensGene.LENGTH	0.181	0.008	0.192
ce6.geneSymbol.LENGTH	0.112	0.006	0.119
ce6.refGene.LENGTH	0.124	0.007	0.131
ce6.xenoRefGene.LENGTH	0.137	0.006	0.143
ci1.geneSymbol.LENGTH	0.022	0.003	0.025
ci1.refGene.LENGTH	0.021	0.004	0.026
ci1.xenoRefGene.LENGTH	0.303	0.008	0.311
ci2.ensGene.LENGTH	0.123	0.005	0.128
ci2.geneSymbol.LENGTH	0.026	0.003	0.028
ci2.refGene.LENGTH	0.053	0.003	0.056
ci2.xenoRefGene.LENGTH	0.534	0.009	0.544
danRer3.ensGene.LENGTH	0.222	0.007	0.228
danRer3.geneSymbol.LENGTH	0.109	0.005	0.113
danRer3.refGene.LENGTH	0.105	0.006	0.112
danRer4.ensGene.LENGTH	0.239	0.007	0.246
danRer4.geneSymbol.LENGTH	0.106	0.005	0.112
danRer4.genscan.LENGTH	0.541	0.010	0.550
danRer4.nscanGene.LENGTH	0.165	0.007	0.172
danRer4.refGene.LENGTH	0.094	0.006	0.100
danRer5.ensGene.LENGTH	0.228	0.007	0.234
danRer5.geneSymbol.LENGTH	0.095	0.004	0.100
danRer5.refGene.LENGTH	0.091	0.005	0.096
danRer5.vegaGene.LENGTH	0.085	0.005	0.091
danRer5.vegaPseudoGene.LENGTH	0.018	0.004	0.021
danRer6.ensGene.LENGTH	0.208	0.006	0.215
danRer6.geneSymbol.LENGTH	0.090	0.004	0.095
danRer6.refGene.LENGTH	0.086	0.005	0.090
danRer6.xenoRefGene.LENGTH	1.028	0.009	1.047
dm1.geneSymbol.LENGTH	0.097	0.006	0.103
dm1.genscan.LENGTH	0.049	0.004	0.054
dm1.refGene.LENGTH	0.098	0.005	0.103
dm2.geneSymbol.LENGTH	0.098	0.006	0.104
dm2.geneid.LENGTH	0.070	0.005	0.074
dm2.genscan.LENGTH	0.041	0.004	0.044
dm2.nscanGene.LENGTH	0.101	0.005	0.107
dm2.refGene.LENGTH	0.106	0.006	0.112
dm3.geneSymbol.LENGTH	0.127	0.006	0.135
dm3.nscanPasaGene.LENGTH	0.095	0.006	0.100
dm3.refGene.LENGTH	0.126	0.006	0.133
dp2.genscan.LENGTH	0.065	0.005	0.069
dp2.xenoRefGene.LENGTH	0.326	0.007	0.333
dp3.geneid.LENGTH	0.101	0.005	0.106
dp3.genscan.LENGTH	0.062	0.005	0.068
dp3.xenoRefGene.LENGTH	0.178	0.007	0.184
droAna1.geneid.LENGTH	0.141	0.007	0.148
droAna1.genscan.LENGTH	0.053	0.003	0.058
droAna1.xenoRefGene.LENGTH	0.345	0.007	0.352
droAna2.genscan.LENGTH	0.107	0.004	0.119
droAna2.xenoRefGene.LENGTH	0.487	0.008	0.496
droEre1.genscan.LENGTH	0.063	0.005	0.069
droEre1.xenoRefGene.LENGTH	0.479	0.008	0.487
droGri1.genscan.LENGTH	0.064	0.005	0.070
droGri1.xenoRefGene.LENGTH	0.531	0.009	0.541
droMoj1.geneid.LENGTH	0.236	0.007	0.249
droMoj1.genscan.LENGTH	0.117	0.006	0.124
droMoj1.xenoRefGene.LENGTH	0.408	0.010	0.419
droMoj2.genscan.LENGTH	0.085	0.005	0.090
droMoj2.xenoRefGene.LENGTH	0.537	0.008	0.545
droPer1.genscan.LENGTH	0.066	0.006	0.073
droPer1.xenoRefGene.LENGTH	0.502	0.009	0.511
droSec1.genscan.LENGTH	0.064	0.005	0.079
droSec1.xenoRefGene.LENGTH	0.517	0.010	0.527
droSim1.geneid.LENGTH	0.082	0.004	0.087
droSim1.genscan.LENGTH	0.057	0.003	0.061
droSim1.xenoRefGene.LENGTH	0.402	0.009	0.411
droVir1.geneid.LENGTH	0.216	0.006	0.222
droVir1.genscan.LENGTH	0.116	0.006	0.122
droVir1.xenoRefGene.LENGTH	0.395	0.009	0.409
droVir2.genscan.LENGTH	0.072	0.007	0.079
droVir2.xenoRefGene.LENGTH	0.528	0.012	0.540
droYak1.geneid.LENGTH	0.110	0.007	0.119
droYak1.genscan.LENGTH	0.075	0.009	0.084
droYak1.xenoRefGene.LENGTH	0.398	0.009	0.407
droYak2.genscan.LENGTH	0.068	0.005	0.073
droYak2.xenoRefGene.LENGTH	0.449	0.007	0.457
equCab1.geneSymbol.LENGTH	0.024	0.003	0.027
equCab1.geneid.LENGTH	0.165	0.005	0.185
equCab1.nscanGene.LENGTH	0.086	0.004	0.090
equCab1.refGene.LENGTH	0.027	0.003	0.030
equCab1.sgpGene.LENGTH	0.142	0.006	0.148
equCab2.ensGene.LENGTH	0.201	0.006	0.208
equCab2.geneSymbol.LENGTH	0.052	0.002	0.055
equCab2.nscanGene.LENGTH	0.131	0.006	0.137
equCab2.refGene.LENGTH	0.012	0.004	0.016
equCab2.xenoRefGene.LENGTH	0.828	0.010	0.839
felCat3.ensGene.LENGTH	0.171	0.005	0.177
felCat3.geneSymbol.LENGTH	0.026	0.002	0.027
felCat3.geneid.LENGTH	1.594	0.027	1.623
felCat3.genscan.LENGTH	0.540	0.009	0.550
felCat3.nscanGene.LENGTH	0.147	0.007	0.155
felCat3.refGene.LENGTH	0.007	0.002	0.009
felCat3.sgpGene.LENGTH	0.264	0.007	0.271
felCat3.xenoRefGene.LENGTH	2.172	0.016	2.188
fr1.ensGene.LENGTH	0.141	0.008	0.150
fr1.genscan.LENGTH	0.111	0.005	0.117
fr2.ensGene.LENGTH	0.271	0.011	0.281
galGal2.ensGene.LENGTH	0.090	0.006	0.097
galGal2.geneSymbol.LENGTH	0.025	0.003	0.029
galGal2.geneid.LENGTH	0.070	0.006	0.076
galGal2.genscan.LENGTH	0.091	0.007	0.099
galGal2.refGene.LENGTH	0.037	0.004	0.042
galGal2.sgpGene.LENGTH	0.086	0.007	0.094
galGal3.ensGene.LENGTH	0.127	0.007	0.135
galGal3.geneSymbol.LENGTH	0.059	0.007	0.067
galGal3.genscan.LENGTH	0.091	0.008	0.099
galGal3.nscanGene.LENGTH	0.125	0.007	0.133
galGal3.refGene.LENGTH	0.038	0.004	0.042
galGal3.xenoRefGene.LENGTH	0.714	0.011	0.724
gasAcu1.ensGene.LENGTH	0.129	0.006	0.135
gasAcu1.nscanGene.LENGTH	0.177	0.005	0.183
hg16.acembly.LENGTH	0.556	0.009	0.565
hg16.ensGene.LENGTH	0.119	0.006	0.125
hg16.exoniphy.LENGTH	0.427	0.008	0.436
hg16.geneSymbol.LENGTH	0.240	0.008	0.248
hg16.geneid.LENGTH	0.116	0.005	0.121
hg16.genscan.LENGTH	0.847	0.018	0.865
hg16.knownGene.LENGTH	0.193	0.006	0.199
hg16.refGene.LENGTH	0.167	0.006	0.174
hg16.sgpGene.LENGTH	0.131	0.006	0.137
hg17.acembly.LENGTH	0.651	0.010	0.660
hg17.acescan.LENGTH	0.406	0.010	0.416
hg17.ccdsGene.LENGTH	0.046	0.005	0.051
hg17.ensGene.LENGTH	0.161	0.006	0.167
hg17.exoniphy.LENGTH	0.649	0.013	0.661
hg17.geneSymbol.LENGTH	0.175	0.007	0.183
hg17.geneid.LENGTH	0.154	0.005	0.167
hg17.genscan.LENGTH	0.131	0.006	0.143
hg17.knownGene.LENGTH	0.227	0.006	0.234
hg17.refGene.LENGTH	0.145	0.006	0.153
hg17.sgpGene.LENGTH	0.155	0.005	0.161
hg17.vegaGene.LENGTH	0.093	0.006	0.098
hg17.vegaPseudoGene.LENGTH	0.057	0.003	0.060
hg17.xenoRefGene.LENGTH	0.311	0.007	0.319
hg18.acembly.LENGTH	1.333	0.015	1.349
hg18.acescan.LENGTH	0.045	0.004	0.051
hg18.ccdsGene.LENGTH	0.082	0.004	0.087
hg18.ensGene.LENGTH	0.320	0.006	0.326
hg18.exoniphy.LENGTH	0.884	0.009	0.893
hg18.geneSymbol.LENGTH	0.178	0.006	0.184
hg18.geneid.LENGTH	0.152	0.006	0.157
hg18.genscan.LENGTH	0.127	0.006	0.134
hg18.knownGene.LENGTH	0.304	0.007	0.313
hg18.knownGeneOld3.LENGTH	0.120	0.005	0.125
hg18.refGene.LENGTH	0.177	0.006	0.183
hg18.sgpGene.LENGTH	0.466	0.006	0.475
hg18.sibGene.LENGTH	0.509	0.007	0.517
hg18.xenoRefGene.LENGTH	0.549	0.008	0.565
hg19.ccdsGene.LENGTH	0.063	0.005	0.068
hg19.ensGene.LENGTH	0.521	0.008	0.530
hg19.exoniphy.LENGTH	0.777	0.014	0.792
hg19.geneSymbol.LENGTH	0.573	0.019	0.593
hg19.knownGene.LENGTH	0.292	0.006	0.297
hg19.nscanGene.LENGTH	0.280	0.006	0.286
hg19.refGene.LENGTH	0.178	0.007	0.185
hg19.xenoRefGene.LENGTH	0.547	0.012	0.559
loxAfr3.xenoRefGene.LENGTH	1.120	0.018	1.138
mm7.ensGene.LENGTH	0.199	0.007	0.207
mm7.geneSymbol.LENGTH	0.166	0.009	0.175
mm7.geneid.LENGTH	0.176	0.007	0.183
mm7.genscan.LENGTH	0.148	0.007	0.156
mm7.knownGene.LENGTH	0.186	0.008	0.194
mm7.refGene.LENGTH	0.210	0.007	0.218
mm7.sgpGene.LENGTH	0.139	0.007	0.146
mm7.xenoRefGene.LENGTH	0.470	0.011	0.482
mm8.ccdsGene.LENGTH	0.075	0.004	0.080
mm8.ensGene.LENGTH	0.171	0.006	0.177
mm8.geneSymbol.LENGTH	0.133	0.006	0.144
mm8.geneid.LENGTH	0.178	0.006	0.185
mm8.genscan.LENGTH	0.104	0.005	0.109
mm8.knownGene.LENGTH	0.184	0.006	0.189
mm8.nscanGene.LENGTH	0.153	0.006	0.159
mm8.refGene.LENGTH	0.173	0.006	0.179
mm8.sgpGene.LENGTH	0.177	0.006	0.184
mm8.sibGene.LENGTH	0.359	0.009	0.368
mm8.xenoRefGene.LENGTH	0.505	0.008	0.514
mm9.acembly.LENGTH	0.588	0.009	0.598
mm9.ccdsGene.LENGTH	0.049	0.004	0.053
mm9.ensGene.LENGTH	0.307	0.007	0.315
mm9.exoniphy.LENGTH	0.993	0.010	1.002
mm9.geneSymbol.LENGTH	0.180	0.008	0.187
mm9.geneid.LENGTH	0.176	0.006	0.182
mm9.genscan.LENGTH	0.139	0.007	0.147
mm9.knownGene.LENGTH	0.224	0.007	0.231
mm9.nscanGene.LENGTH	0.182	0.006	0.189
mm9.refGene.LENGTH	0.184	0.007	0.191
mm9.sgpGene.LENGTH	0.178	0.006	0.184
mm9.xenoRefGene.LENGTH	0.639	0.009	0.656
monDom1.genscan.LENGTH	0.147	0.006	0.153
monDom4.ensGene.LENGTH	0.167	0.006	0.173
monDom4.geneSymbol.LENGTH	0.006	0.003	0.011
monDom4.genscan.LENGTH	0.080	0.005	0.086
monDom4.nscanGene.LENGTH	0.096	0.007	0.103
monDom4.refGene.LENGTH	0.022	0.005	0.026
monDom4.xenoRefGene.LENGTH	0.643	0.010	0.654
monDom5.ensGene.LENGTH	0.200	0.006	0.207
monDom5.geneSymbol.LENGTH	0.006	0.003	0.009
monDom5.genscan.LENGTH	0.090	0.006	0.096
monDom5.nscanGene.LENGTH	0.220	0.006	0.228
monDom5.refGene.LENGTH	0.007	0.003	0.010
monDom5.xenoRefGene.LENGTH	1.034	0.012	1.046
ornAna1.ensGene.LENGTH	0.172	0.007	0.179
ornAna1.geneSymbol.LENGTH	0.006	0.003	0.009
ornAna1.refGene.LENGTH	0.006	0.003	0.009
ornAna1.xenoRefGene.LENGTH	1.004	0.011	1.016
oryLat2.ensGene.LENGTH	0.161	0.006	0.168
oryLat2.geneSymbol.LENGTH	0.072	0.003	0.075
oryLat2.refGene.LENGTH	0.041	0.003	0.043
oryLat2.xenoRefGene.LENGTH	0.880	0.011	0.891
panTro1.ensGene.LENGTH	0.214	0.006	0.220
panTro1.geneid.LENGTH	0.083	0.004	0.088
panTro1.genscan.LENGTH	0.143	0.006	0.150
panTro1.xenoRefGene.LENGTH	0.247	0.007	0.255
panTro2.ensGene.LENGTH	0.239	0.006	0.245
panTro2.geneSymbol.LENGTH	0.214	0.006	0.220
panTro2.genscan.LENGTH	0.152	0.007	0.159
panTro2.nscanGene.LENGTH	0.160	0.006	0.165
panTro2.refGene.LENGTH	0.584	0.006	0.591
panTro2.xenoRefGene.LENGTH	0.871	0.009	0.892
petMar1.xenoRefGene.LENGTH	0.484	0.009	0.494
ponAbe2.ensGene.LENGTH	0.158	0.007	0.166
ponAbe2.geneSymbol.LENGTH	0.020	0.003	0.023
ponAbe2.genscan.LENGTH	0.106	0.007	0.114
ponAbe2.nscanGene.LENGTH	0.108	0.006	0.115
ponAbe2.refGene.LENGTH	0.020	0.004	0.024
ponAbe2.xenoRefGene.LENGTH	1.089	0.012	1.102
priPac1.xenoRefGene.LENGTH	0.649	0.009	0.659
rheMac2.ensGene.LENGTH	0.286	0.006	0.292
rheMac2.geneSymbol.LENGTH	0.010	0.003	0.013
rheMac2.geneid.LENGTH	0.133	0.007	0.140
rheMac2.nscanGene.LENGTH	0.147	0.006	0.155
rheMac2.refGene.LENGTH	0.048	0.004	0.052
rheMac2.sgpGene.LENGTH	0.174	0.007	0.182
rheMac2.xenoRefGene.LENGTH	0.827	0.010	0.838
rn3.ensGene.LENGTH	0.207	0.008	0.222
rn3.geneSymbol.LENGTH	0.121	0.005	0.127
rn3.geneid.LENGTH	0.133	0.006	0.139
rn3.genscan.LENGTH	0.118	0.006	0.124
rn3.knownGene.LENGTH	0.083	0.004	0.086
rn3.nscanGene.LENGTH	0.157	0.007	0.164
rn3.refGene.LENGTH	0.122	0.004	0.127
rn3.sgpGene.LENGTH	0.144	0.006	0.149
rn3.xenoRefGene.LENGTH	0.992	0.010	1.002
rn4.ensGene.LENGTH	0.649	0.007	0.663
rn4.geneSymbol.LENGTH	0.106	0.005	0.142
rn4.geneid.LENGTH	0.174	0.006	0.180
rn4.genscan.LENGTH	0.127	0.007	0.137
rn4.knownGene.LENGTH	0.061	0.005	0.069
rn4.nscanGene.LENGTH	0.108	0.006	0.120
rn4.refGene.LENGTH	0.097	0.006	0.106
rn4.sgpGene.LENGTH	0.157	0.006	0.164
rn4.xenoRefGene.LENGTH	0.492	0.009	0.501
sacCer1.ensGene.LENGTH	0.060	0.004	0.064
sacCer2.ensGene.LENGTH	0.030	0.004	0.044
strPur1.geneSymbol.LENGTH	0.009	0.003	0.012
strPur1.genscan.LENGTH	0.121	0.009	0.129
strPur1.refGene.LENGTH	0.036	0.004	0.040
strPur1.xenoRefGene.LENGTH	0.773	0.010	0.784
strPur2.geneSymbol.LENGTH	0.008	0.003	0.012
strPur2.genscan.LENGTH	0.210	0.010	0.221
strPur2.refGene.LENGTH	0.040	0.003	0.043
strPur2.xenoRefGene.LENGTH	1.133	0.018	1.159
supportedGeneIDs	0.016	0.004	0.025
supportedGenomes	0.174	0.009	0.653
taeGut1.ensGene.LENGTH	0.151	0.006	0.157
taeGut1.geneSymbol.LENGTH	0.047	0.003	0.050
taeGut1.genscan.LENGTH	0.095	0.006	0.101
taeGut1.nscanGene.LENGTH	0.082	0.004	0.086
taeGut1.refGene.LENGTH	0.007	0.003	0.009
taeGut1.xenoRefGene.LENGTH	0.857	0.010	0.886
tetNig1.ensGene.LENGTH	0.204	0.007	0.212
tetNig1.geneid.LENGTH	0.164	0.006	0.171
tetNig1.genscan.LENGTH	0.130	0.005	0.136
tetNig1.nscanGene.LENGTH	0.189	0.008	0.197
tetNig2.ensGene.LENGTH	0.175	0.008	0.183
unfactor	0.099	0.006	0.105
xenTro1.genscan.LENGTH	0.202	0.009	0.210
xenTro2.ensGene.LENGTH	0.218	0.008	0.226
xenTro2.geneSymbol.LENGTH	0.051	0.005	0.057
xenTro2.genscan.LENGTH	0.141	0.008	0.148
xenTro2.refGene.LENGTH	0.067	0.005	0.073