BioC experimental data: CHECK report for TCGAMethylation450k on moscato2

Package: TCGAMethylation450k

Version: 0.99.4

Command: rm -rf TCGAMethylation450k.buildbin-libdir && mkdir TCGAMethylation450k.buildbin-libdir && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=TCGAMethylation450k.buildbin-libdir TCGAMethylation450k_0.99.4.tar.gz >TCGAMethylation450k-install.out 2>&1 && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD check --library=TCGAMethylation450k.buildbin-libdir --install="check:TCGAMethylation450k-install.out" --force-multiarch --no-vignettes --timings TCGAMethylation450k_0.99.4.tar.gz && mv TCGAMethylation450k.buildbin-libdir/* TCGAMethylation450k.Rcheck/ && rmdir TCGAMethylation450k.buildbin-libdir

StartedAt: 2013-10-08 13:57:57 -0700 (Tue, 08 Oct 2013)

EndedAt: 2013-10-08 14:01:38 -0700 (Tue, 08 Oct 2013)

EllapsedTime: 221.3 seconds

RetCode: 0

Status: OK

CheckDir: TCGAMethylation450k.Rcheck

Warnings: 0

Command output

* using log directory 'E:/biocbld/bbs-2.12-data-experiment/meat/TCGAMethylation450k.Rcheck'
* using R version 3.0.1 (2013-05-16)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'TCGAMethylation450k/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'TCGAMethylation450k' version '0.99.4'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'TCGAMethylation450k' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 154.4Mb
  sub-directories of 1Mb or more:
    extdata  154.4Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... NONE
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  'E:/biocbld/bbs-2.12-data-experiment/meat/TCGAMethylation450k.Rcheck/00check.log'
for details.


install for i386

* installing *source* package 'TCGAMethylation450k' ...
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

install for x64

* installing *source* package 'TCGAMethylation450k' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'TCGAMethylation450k' as TCGAMethylation450k_0.99.4.zip
* DONE (TCGAMethylation450k)

BioC experimental data: CHECK report for TCGAMethylation450k on moscato2

Summary

Command output