BioC experimental data: CHECK report for KEGGdzPathwaysGEO on george2

Package: KEGGdzPathwaysGEO

Version: 1.1.2

Command: /home/biocbuild/bbs-2.12-bioc/R/bin/R CMD check --no-vignettes --timings KEGGdzPathwaysGEO_1.1.2.tar.gz

StartedAt: 2013-10-08 12:56:51 -0700 (Tue, 08 Oct 2013)

EndedAt: 2013-10-08 13:07:18 -0700 (Tue, 08 Oct 2013)

EllapsedTime: 627.5 seconds

RetCode: 0

Status:  OK

CheckDir: KEGGdzPathwaysGEO.Rcheck

Warnings: 0

* using log directory ‘/home/biocbuild/bbs-2.12-data-experiment/meat/KEGGdzPathwaysGEO.Rcheck’
* using R version 3.0.1 (2013-05-16)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘KEGGdzPathwaysGEO/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘KEGGdzPathwaysGEO’ version ‘1.1.2’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘KEGGdzPathwaysGEO’ can be installed ... [3s/3s] OK
* checking installed package size ... NOTE
  installed size is 300.7Mb
  sub-directories of 1Mb or more:
    data  300.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [8s/11s] OK
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  ‘/home/biocbuild/bbs-2.12-data-experiment/meat/KEGGdzPathwaysGEO.Rcheck/00check.log’
for details.

* installing *source* package ‘KEGGdzPathwaysGEO’ ...
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (KEGGdzPathwaysGEO)

name	user	system	elapsed
GSE1297	0.156	0.020	0.208
GSE14762	0.364	0.028	0.414
GSE15471	0.524	0.080	0.614
GSE16515	0.264	0.032	0.522
GSE18842	0.468	0.112	0.587
GSE19188	0.704	0.136	0.967
GSE19728	0.164	0.000	0.173
GSE20153	0.120	0.036	0.171
GSE20291	0.092	0.016	0.144
GSE21354	0.160	0.048	0.299
GSE3467	0.152	0.032	0.376
GSE3585	0.056	0.012	0.122
GSE3678	0.160	0.028	0.241
GSE4107	0.160	0.012	0.217
GSE5281_EC	0.168	0.024	0.212
GSE5281_HIP	0.164	0.012	0.220
GSE5281_VCX	0.200	0.016	0.242
GSE6956AA	0.072	0.000	0.082
GSE6956C	0.064	0.008	0.077
GSE781	0.084	0.004	0.088
GSE8671	0.316	0.052	0.780
GSE8762	0.228	0.028	0.359
GSE9348	0.392	0.044	1.070
GSE9476	0.136	0.024	0.361
KEGGdzPathwaysGEO-package	0.492	0.052	1.181