BioC experimental data: CHECK report for GWASdata on moscato2

Package: GWASdata

Version: 1.0.9

Command: rm -rf GWASdata.buildbin-libdir && mkdir GWASdata.buildbin-libdir && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=GWASdata.buildbin-libdir GWASdata_1.0.9.tar.gz >GWASdata-install.out 2>&1 && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD check --library=GWASdata.buildbin-libdir --install="check:GWASdata-install.out" --force-multiarch --no-vignettes --timings GWASdata_1.0.9.tar.gz && mv GWASdata.buildbin-libdir/* GWASdata.Rcheck/ && rmdir GWASdata.buildbin-libdir

StartedAt: 2013-10-08 13:23:11 -0700 (Tue, 08 Oct 2013)

EndedAt: 2013-10-08 13:31:25 -0700 (Tue, 08 Oct 2013)

EllapsedTime: 493.9 seconds

RetCode: 0

Status:  OK

CheckDir: GWASdata.Rcheck

Warnings: 0

* using log directory 'E:/biocbld/bbs-2.12-data-experiment/meat/GWASdata.Rcheck'
* using R version 3.0.1 (2013-05-16)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'GWASdata/DESCRIPTION' ... OK
* this is package 'GWASdata' version '1.0.9'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... NOTE
Found the following non-portable file paths:
  GWASdata/inst/extdata/affy_raw_data/GIGAS_g_GAINmixHapMapAffy2_GenomeWideEx_6_A03_31250.BIRDSEED.ALLELE_SUMMARY.TXT
  GWASdata/inst/extdata/affy_raw_data/GIGAS_g_GAINmixHapMapAffy2_GenomeWideEx_6_A03_31250.BIRDSEED.CHP.TXT
  GWASdata/inst/extdata/affy_raw_data/GIGAS_g_GAINmixHapMapAffy2_GenomeWideEx_6_A05_31282.BIRDSEED.ALLELE_SUMMARY.TXT
  GWASdata/inst/extdata/affy_raw_data/GIGAS_g_GAINmixHapMapAffy2_GenomeWideEx_6_A05_31282.BIRDSEED.CHP.TXT
  GWASdata/inst/extdata/affy_raw_data/GIGAS_g_GAINmixHapMapAffy2_GenomeWideEx_6_B02_31236.BIRDSEED.ALLELE_SUMMARY.TXT
  GWASdata/inst/extdata/affy_raw_data/GIGAS_g_GAINmixHapMapAffy2_GenomeWideEx_6_B02_31236.BIRDSEED.CHP.TXT

Tarballs are only required to store paths of up to 100 bytes and cannot
store those of more than 256 bytes, with restrictions including to 100
bytes for the final component.
See section 'Package structure' in the 'Writing R Extensions' manual.
* checking whether package 'GWASdata' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 12.5Mb
  sub-directories of 1Mb or more:
    extdata  12.0Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... [14s] OK
Examples with CPU or elapsed time > 5s
                 user system elapsed
GWASdata-package 0.09   0.01   12.59
** running examples for arch 'x64' ... [4s] OK
* checking PDF version of manual ... OK

NOTE: There were 2 notes.
See
  'E:/biocbld/bbs-2.12-data-experiment/meat/GWASdata.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'GWASdata' ...
** data
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

install for x64

* installing *source* package 'GWASdata' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GWASdata' as GWASdata_1.0.9.zip
* DONE (GWASdata)