BioC experimental data: CHECK report for GGdata on george2

Package: GGdata

Version: 1.0.21

Command: /home/biocbuild/bbs-2.12-bioc/R/bin/R CMD check --no-vignettes --timings GGdata_1.0.21.tar.gz

StartedAt: 2013-10-08 12:49:56 -0700 (Tue, 08 Oct 2013)

EndedAt: 2013-10-08 12:56:41 -0700 (Tue, 08 Oct 2013)

EllapsedTime: 405.4 seconds

RetCode: 0

Status:  OK

CheckDir: GGdata.Rcheck

Warnings: 0

* using log directory ‘/home/biocbuild/bbs-2.12-data-experiment/meat/GGdata.Rcheck’
* using R version 3.0.1 (2013-05-16)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘GGdata/DESCRIPTION’ ... OK
* this is package ‘GGdata’ version ‘1.0.21’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘GGdata’ can be installed ... [36s/38s] OK
* checking installed package size ... NOTE
  installed size is 71.9Mb
  sub-directories of 1Mb or more:
    data   21.1Mb
    parts  50.8Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File ‘GGdata/R/zzz.R’:
  .onLoad calls:
    packageStartupMessage(paste("To get a tailored smlSet, use getSS(\"",     pkgname, "\", [chrvec])", sep = ""), "\n")
    packageStartupMessage("available chromosomes are named ", paste(selectSome(cn),     collapse = ", "), "\n")

See section ‘Good practice’ in '?.onAttach'.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [48s/68s] OK
Examples with CPU or elapsed time > 5s
               user system elapsed
hmceuB36-pkg 28.409  1.052  48.687
* checking PDF version of manual ... OK

NOTE: There were 2 notes.
See
  ‘/home/biocbuild/bbs-2.12-data-experiment/meat/GGdata.Rcheck/00check.log’
for details.

* installing *source* package ‘GGdata’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (GGdata)

name	user	system	elapsed
hmceuB36-pkg	28.409	1.052	48.687