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Package 623/658 | Hostname | OS / Arch | BUILD | CHECK | BUILD BIN | ||||
ternarynet 1.3.2 Matthew N. McCall
| george2 | Linux (Ubuntu 12.04.1 LTS) / x86_64 | OK | OK | |||||
moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK | |||||
petty | Mac OS X Leopard (10.5.8) / i386 | OK | [ OK ] | OK |
Package: ternarynet |
Version: 1.3.2 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch ternarynet_1.3.2.tar.gz |
StartedAt: 2013-03-25 04:57:40 -0700 (Mon, 25 Mar 2013) |
EndedAt: 2013-03-25 05:00:38 -0700 (Mon, 25 Mar 2013) |
EllapsedTime: 178.2 seconds |
RetCode: 0 |
Status: OK |
CheckDir: ternarynet.Rcheck |
Warnings: 0 |
* using log directory '/Users/biocbuild/bbs-2.12-bioc/meat/ternarynet.Rcheck' * using R Under development (unstable) (2013-02-26 r62077) * using platform: i386-apple-darwin9.8.0 (32-bit) * using session charset: ASCII * using option '--no-vignettes' * checking for file 'ternarynet/DESCRIPTION' ... OK * this is package 'ternarynet' version '1.3.2' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package 'ternarynet' can be installed ... [7s/7s] OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking compiled code ... OK * checking sizes of PDF files under 'inst/doc' ... OK * checking installed files from 'inst/doc' ... OK * checking examples ... [139s/139s] OK Examples with CPU or elapsed time > 5s user system elapsed predictAttractor 14.732 0.018 14.750 ternaryFit-class 14.673 0.021 14.695 tnetpost 14.501 0.015 14.517 ternaryPost-class 14.423 0.021 14.444 plotPost 14.381 0.015 14.397 tnetfit 14.035 0.013 14.048 graphPosterior 13.645 0.014 13.660 plotFit 13.453 0.017 13.470 plotTraces 13.079 0.015 13.094 attractorSummary 10.864 0.012 10.877 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignettes ... SKIPPED * checking PDF version of manual ... OK
ternarynet.Rcheck/00install.out:
* installing *source* package 'ternarynet' ... ** libs *** arch - i386 g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c tnetfit.cc -o tnetfit.o tnetfit.cc: In function 'SEXPREC* tnetfit(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)': tnetfit.cc:73: warning: unused variable 'tempi' tnetfit.cc:98: warning: 'muci_old' may be used uninitialized in this function tnetfit.cc:98: warning: 'sigmaci' may be used uninitialized in this function tnetfit.cc:98: warning: 'sigma0' may be used uninitialized in this function tnetfit.cc:77: warning: 'newScore' may be used uninitialized in this function g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c tnetfuncs.cc -o tnetfuncs.o tnetfuncs.cc: In function 'double AttractorDistanceForced(int, int, int, int, double, int*, int*, int*, const double*, const int*)': tnetfuncs.cc:469: warning: unused variable 'tableWidth' tnetfuncs.cc:477: warning: unused variable 'ipause' tnetfuncs.cc: In function 'double initialTemp(double, int, int, int, int, int, double, double, double, int, const double*, int*, int*, int*, const double*, const int*)': tnetfuncs.cc:567: warning: unused variable 'ipause' tnetfuncs.cc:571: warning: unused variable 'i' g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c tnetpost.cc -o tnetpost.o tnetpost.cc: In function 'SEXPREC* tnetpost(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)': tnetpost.cc:25: warning: unused variable 'ipause' tnetpost.cc:27: warning: unused variable 'm0fit' tnetpost.cc:28: warning: unused variable 'finalScore' tnetpost.cc:30: warning: unused variable 'l0' tnetpost.cc:30: warning: unused variable 'stage_count' tnetpost.cc:30: warning: unused variable 'tempi' tnetpost.cc:30: warning: unused variable 'jtrans' tnetpost.cc:30: warning: unused variable 'nTransition' g++ -arch i386 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o ternarynet.so tnetfit.o tnetfuncs.o tnetpost.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-2.12-bioc/meat/ternarynet.Rcheck/ternarynet/libs/i386 ** R ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes 'ternarynet.Rnw' ** testing if installed package can be loaded * DONE (ternarynet)
ternarynet.Rcheck/ternarynet-Ex.timings:
name | user | system | elapsed | |
attractorSummary | 10.864 | 0.012 | 10.877 | |
graphPosterior | 13.645 | 0.014 | 13.660 | |
plotFit | 13.453 | 0.017 | 13.470 | |
plotPost | 14.381 | 0.015 | 14.397 | |
plotTraces | 13.079 | 0.015 | 13.094 | |
predictAttractor | 14.732 | 0.018 | 14.750 | |
simulateSteadyState | 0.023 | 0.017 | 0.040 | |
ternaryFit-class | 14.673 | 0.021 | 14.695 | |
ternaryFitParameters-class | 0.030 | 0.021 | 0.051 | |
ternaryPost-class | 14.423 | 0.021 | 14.444 | |
tnetfit | 14.035 | 0.013 | 14.048 | |
tnetpost | 14.501 | 0.015 | 14.517 | |