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Package 478/658HostnameOS / ArchBUILDCHECKBUILD BIN
plateCore 1.17.0
Errol Strain
Snapshot Date: 2013-03-24 17:01:43 -0700 (Sun, 24 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/plateCore
Last Changed Rev: 70052 / Revision: 74774
Last Changed Date: 2012-10-01 15:43:56 -0700 (Mon, 01 Oct 2012)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: plateCore
Version: 1.17.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch plateCore_1.17.0.tar.gz
StartedAt: 2013-03-25 04:04:56 -0700 (Mon, 25 Mar 2013)
EndedAt: 2013-03-25 04:08:53 -0700 (Mon, 25 Mar 2013)
EllapsedTime: 237.3 seconds
RetCode: 0
Status:  OK 
CheckDir: plateCore.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.12-bioc/meat/plateCore.Rcheck'
* using R Under development (unstable) (2013-02-26 r62077)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'plateCore/DESCRIPTION' ... OK
* this is package 'plateCore' version '1.17.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'plateCore' can be installed ... [9s/9s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
panel.xyplot.flowPlate: warning in filterBoundary(filter =
  filter[[nm]], parameters = c(channel.x.name, channel.y.name), frame =
  frames[[nm]]): partial argument match of 'filter' to 'filter.object'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... [118s/118s] OK
Examples with CPU or elapsed time > 5s
                            user system elapsed
mfiPlot-methods           14.407  0.269  14.680
applyControlGates-methods 12.956  0.301  13.267
on-methods                12.845  0.360  13.495
summaryStats-methods      12.282  0.287  12.576
fpbind-methods             6.899  0.449   7.363
Subset-methods             5.481  0.251   5.747
fixAutoFl-methods          5.115  0.464   5.588
compensate-methods         4.793  0.331   5.132
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  '/Users/biocbuild/bbs-2.12-bioc/meat/plateCore.Rcheck/00check.log'
for details.

plateCore.Rcheck/00install.out:

* installing *source* package 'plateCore' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'plateCoreVig.Rnw' 
** testing if installed package can be loaded
* DONE (plateCore)

plateCore.Rcheck/plateCore-Ex.timings:

nameusersystemelapsed
Subset-methods5.4810.2515.747
applyControlGates-methods12.956 0.30113.267
compensate-methods4.7930.3315.132
compensationSet0.2290.0280.258
densityplot-methods1.4510.0801.533
fixAutoFl-methods5.1150.4645.588
flowPlate-class2.8230.1883.019
flowPlate-method2.8310.1893.024
fpbind-methods6.8990.4497.363
getGroups-methods1.6380.0831.722
gutterPlot-methods1.3080.0961.408
mfiPlot-methods14.407 0.26914.680
on-methods12.845 0.36013.495
panel.densityplot.flowPlate1.8920.1082.005
panel.xyplot.flowPlate1.6590.0991.762
plateCore-package3.1810.2043.397
plateSet-methods2.7470.1862.936
plotPlate-methods4.0500.3014.367
prepanel.densityplot.flowPlate1.6360.0921.732
prepanel.xyplot.flowPlate1.6990.0961.800
setControlGates-methods3.4410.2223.671
summaryStats-methods12.282 0.28712.576
wellAnnotation-methods1.2910.0831.378
xyplot-methods1.4300.0821.516