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Package 431/658HostnameOS / ArchBUILDCHECKBUILD BIN
nem 2.35.1
Holger Froehlich
Snapshot Date: 2013-03-24 17:01:43 -0700 (Sun, 24 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/nem
Last Changed Rev: 73775 / Revision: 74774
Last Changed Date: 2013-02-27 08:54:42 -0800 (Wed, 27 Feb 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK [ OK ]
petty Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: nem
Version: 2.35.1
Command: rm -rf nem.buildbin-libdir && mkdir nem.buildbin-libdir && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=nem.buildbin-libdir nem_2.35.1.tar.gz
StartedAt: 2013-03-25 05:56:02 -0700 (Mon, 25 Mar 2013)
EndedAt: 2013-03-25 05:56:30 -0700 (Mon, 25 Mar 2013)
EllapsedTime: 27.7 seconds
RetCode: 0
Status:  OK  
PackageFile: nem_2.35.1.zip
PackageFileSize: 3.625 MiB

Command output


install for i386

* installing *source* package 'nem' ...
** libs
gcc -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c MCMC.c -o MCMC.o
MCMC.c: In function 'network_likelihood':
MCMC.c:116:41: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
MCMC.c:125:6: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
MCMC.c: In function 'MCMCrun':
MCMC.c:403:10: warning: unused variable 'stored2' [-Wunused-variable]
MCMC.c:402:10: warning: unused variable 'stored' [-Wunused-variable]
MCMC.c:359:35: warning: unused variable 'mutinf' [-Wunused-variable]
MCMC.c: In function 'network_likelihood':
MCMC.c:108:6: warning: 'max_loglik0_idx' may be used uninitialized in this function [-Wuninitialized]
MCMC.c: In function 'MCMCrun':
MCMC.c:455:24: warning: 'delta_poss_operations' may be used uninitialized in this function [-Wuninitialized]
MCMC.c:28:48: warning: 'logPrior_cur' may be used uninitialized in this function [-Wuninitialized]
MCMC.c:407:24: note: 'logPrior_cur' was declared here
MCMC.c:28:20: warning: 'likelihood' may be used uninitialized in this function [-Wuninitialized]
MCMC.c:407:12: note: 'likelihood' was declared here
gcc -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c netlearn.c -o netlearn.o
netlearn.c: In function 'learn_network':
netlearn.c:168:9: warning: unused variable 'lik_switch' [-Wunused-variable]
gcc -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c wrapper.c -o wrapper.o
wrapper.c: In function 'MCMCrunWrapper':
wrapper.c:107:5: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
gcc -m32 -shared -s -static-libgcc -o nem.dll tmp.def MCMC.o netlearn.o wrapper.o -Ld:/RCompile/CRANpkg/extralibs64/local/lib/i386 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LE:/biocbld/BBS-2˜1.12-/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.12-bioc/meat/nem.buildbin-libdir/nem/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'nem.Rnw' using 'latin1' 
** testing if installed package can be loaded

install for x64

* installing *source* package 'nem' ...
** libs
gcc -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c MCMC.c -o MCMC.o
MCMC.c: In function 'network_likelihood':
MCMC.c:116:41: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
MCMC.c:125:6: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
MCMC.c: In function 'MCMCrun':
MCMC.c:403:10: warning: unused variable 'stored2' [-Wunused-variable]
MCMC.c:402:10: warning: unused variable 'stored' [-Wunused-variable]
MCMC.c:359:35: warning: unused variable 'mutinf' [-Wunused-variable]
MCMC.c: In function 'network_likelihood':
MCMC.c:108:6: warning: 'max_loglik0_idx' may be used uninitialized in this function [-Wuninitialized]
MCMC.c: In function 'MCMCrun':
MCMC.c:455:24: warning: 'delta_poss_operations' may be used uninitialized in this function [-Wuninitialized]
MCMC.c:455:10: warning: 'logPrior_cur' may be used uninitialized in this function [-Wuninitialized]
MCMC.c:455:10: warning: 'logPriorOld' may be used uninitialized in this function [-Wuninitialized]
MCMC.c:455:10: warning: 'likelihood' may be used uninitialized in this function [-Wuninitialized]
gcc -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c netlearn.c -o netlearn.o
netlearn.c: In function 'learn_network':
netlearn.c:168:9: warning: unused variable 'lik_switch' [-Wunused-variable]
gcc -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c wrapper.c -o wrapper.o
wrapper.c: In function 'MCMCrunWrapper':
wrapper.c:107:5: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
gcc -m64 -shared -s -static-libgcc -o nem.dll tmp.def MCMC.o netlearn.o wrapper.o -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LE:/biocbld/BBS-2˜1.12-/R/bin/x64 -lR
installing to E:/biocbld/bbs-2.12-bioc/meat/nem.buildbin-libdir/nem/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'nem' as nem_2.35.1.zip
* DONE (nem)