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Package 413/658HostnameOS / ArchBUILDCHECKBUILD BIN
miRNApath 1.19.0
James M. Ward
Snapshot Date: 2013-03-24 17:01:43 -0700 (Sun, 24 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/miRNApath
Last Changed Rev: 72436 / Revision: 74774
Last Changed Date: 2013-01-10 11:07:26 -0800 (Thu, 10 Jan 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: miRNApath
Version: 1.19.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch miRNApath_1.19.0.tar.gz
StartedAt: 2013-03-25 03:37:23 -0700 (Mon, 25 Mar 2013)
EndedAt: 2013-03-25 03:38:20 -0700 (Mon, 25 Mar 2013)
EllapsedTime: 57.7 seconds
RetCode: 0
Status:  OK 
CheckDir: miRNApath.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.12-bioc/meat/miRNApath.Rcheck'
* using R Under development (unstable) (2013-02-26 r62077)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'miRNApath/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'miRNApath' version '1.19.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'miRNApath' can be installed ... [2s/2s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... [26s/26s] OK
Examples with CPU or elapsed time > 5s
             user system elapsed
mirnaTable 19.367  4.109  23.769
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

miRNApath.Rcheck/00install.out:

* installing *source* package 'miRNApath' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'miRNApath.Rnw' 
** testing if installed package can be loaded
* DONE (miRNApath)

miRNApath.Rcheck/miRNApath-Ex.timings:

nameusersystemelapsed
checkColumns0.0080.0070.014
convertFoldChange0.0060.0050.011
filtermirnapath0.1550.0310.192
loadmirnapath0.1380.0250.166
loadmirnapathways0.1830.0340.220
loadmirnatogene0.3210.0420.364
miRNApath-package0.0950.0410.138
mirnaTable19.367 4.10923.769
mirnaobj0.0450.0090.055
mirnapath-class0.0500.0120.063
runEnrichment0.0100.0080.019